Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq2003 237 2e-57 >seq2003 Length=7520 Score = 237 bits (262), Expect = 2e-57 Identities = 320/446 (72%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 41146 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 41205 ||||||||||| ||||| |||||||||||||||||||| |||||| | || || | Sbjct 6686 CCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTACTG 6745 Query 41206 ATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGCGATCGTGAAATAT 41265 ||||| | || ||| |||| | || || || |||||||||||| ||| Sbjct 6746 ATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAGTAT 6805 Query 41266 ATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAA 41325 |||| ||||| || || || || |||||||| || | ||| ||||| |||| | Sbjct 6806 GTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAG 6865 Query 41326 ATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACG 41385 || ||||| || ||||| ||||| || | ||||||| |||| | ||| | Sbjct 6866 ATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCAGTCT 6925 Query 41386 GCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTATCCG 41445 ||||| ||||| || || ||||| || || || ||||| || || || ||| || ||| Sbjct 6926 GCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTCTACCCG 6985 Query 41446 ATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGAAGAA 41505 | ||||| |||||||| ||| |||||||| |||||||| ||||| ||||| |||||| Sbjct 6986 TTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAA 7045 Query 41506 AACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTA 41565 |||||| | ||||| || || |||||||| ||| | ||| ||||||| |||| | Sbjct 7046 AACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCAGCGCCTG 7105 Query 41566 ATCAATAACGATTACATCACTCTGTT 41591 ||||| | | ||||||||||||| Sbjct 7106 ATCAAGGGCCAGAACATCACTCTGTT 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565527969932640