Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014467.1
Length=176788
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 237 2e-57
>seq2003
Length=7520
Score = 237 bits (262), Expect = 2e-57
Identities = 320/446 (72%), Gaps = 0/446 (0%)
Strand=Plus/Plus
Query 41146 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 41205
||||||||||| ||||| |||||||||||||||||||| |||||| | || || |
Sbjct 6686 CCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTACTG 6745
Query 41206 ATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGCGATCGTGAAATAT 41265
||||| | || ||| |||| | || || || |||||||||||| |||
Sbjct 6746 ATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAGTAT 6805
Query 41266 ATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAA 41325
|||| ||||| || || || || |||||||| || | ||| ||||| |||| |
Sbjct 6806 GTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAG 6865
Query 41326 ATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACG 41385
|| ||||| || ||||| ||||| || | ||||||| |||| | ||| |
Sbjct 6866 ATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCAGTCT 6925
Query 41386 GCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTATCCG 41445
||||| ||||| || || ||||| || || || ||||| || || || ||| || |||
Sbjct 6926 GCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTCTACCCG 6985
Query 41446 ATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGAAGAA 41505
| ||||| |||||||| ||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct 6986 TTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAA 7045
Query 41506 AACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTA 41565
|||||| | ||||| || || |||||||| ||| | ||| ||||||| |||| |
Sbjct 7046 AACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCAGCGCCTG 7105
Query 41566 ATCAATAACGATTACATCACTCTGTT 41591
||||| | | |||||||||||||
Sbjct 7106 ATCAAGGGCCAGAACATCACTCTGTT 7131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565527969932640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |