Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq2003 165 1e-35 seq3915 111 2e-19 >seq2003 Length=7520 Score = 165 bits (182), Expect = 1e-35 Identities = 288/414 (70%), Gaps = 4/414 (1%) Strand=Plus/Minus Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115 ||||||| ||||| || | || || || ||||| || | ||||||||||| |||| Sbjct 7094 ACATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGC 7035 Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175 | ||| || || ||||| || | | ||| ||||| |||||||||| ||||| | | Sbjct 7034 CGCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACA 6975 Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235 || || || || || || ||||| ||||| || ||| || ||||||| |||||| Sbjct 6974 ACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACA 6915 Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGAT-CCC 129294 ||| | || || | |||||||||| || |||| |||| ||| || | | | ||| Sbjct 6914 GTTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTAT-CTCGCTGCCC 6856 Query 129295 TCGGCACGAAT-CGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATATAGTCAAC 129353 || || || || ||| |||||| ||| || || ||||||| || ||| | || Sbjct 6855 AGCGCGCGGATGCGGCCCG-CGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCAC 6797 Query 129354 GATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACACA 129413 ||| | || | ||| || |||||||| ||||| ||| |||| |||||| || || Sbjct 6796 GATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCA 6737 Query 129414 AGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 ||||| ||||| || || || || || ||||| || | || || || ||||| Sbjct 6736 GGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAG 6683 >seq3915 Length=2367 Score = 111 bits (122), Expect = 2e-19 Identities = 423/651 (65%), Gaps = 26/651 (4%) Strand=Plus/Plus Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114 ||||||||| ||||||||| ||| ||||||||||| || |||||||| || || Sbjct 349 CTGGGTGCCGGTGAGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATGATCTTGGCATT 408 Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174 ||||||||||| ||| |||||||||| ||| | |||||| ||||| || ||||| || Sbjct 409 GCCTTCCATCACCTTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTGACGTAAAAGCG 468 Query 127175 AATCGCTTCCAAAGCGTTTACCGCGTGTTTGGCGAGATACAGAGCTTCTTTTACTTTAGT 127234 || |||| | | | || || | ||| || ||||| ||||| | Sbjct 469 GATGGCTT-CGAGGATATTGACGTTCATCAGGC-AGCGGTAGAGCAGCTTTTTCAGCGCA 526 Query 127235 CAGTTGTTGA--ACTTGCAGACCAGCC-GGGAATACTTGACAGCACAACATATCATAGGT 127291 | ||||||| |||| | | ||| || || ||| || | | | || | Sbjct 527 CGCTTGTTGACCACTT-TGGTCTCGCCATTGATGACATGATTGC----CCTCACCCAGTT 581 Query 127292 GCG----------TTTCTCGCGAATCAGATCGTCGTAATACTGAGTCACGGCAGTGGCGC 127341 ||| ||| | ||||| || |||||||| || | | | || || | Sbjct 582 GCGAATACAACATGGTCTGCTGGATCAGCTCATCGTAATAATGGGCGATATCTGTCGCAC 641 Query 127342 GTTTCATGATCTTTTCATCGAGCATGATCCTATCAAACACTTCGGTCGGATTCACATAC- 127400 | |||| ||||||| | ||| ||| |||||||| | | || ||| || Sbjct 642 GCGCGGTGATGTTTTCATTGCGCACGATGTCATCAAACATGACAGAAGG-GTCATTGACG 700 Query 127401 AGATTCCGCATGATGTGAGTATACGAACGGCTGTGAATCGTTTCACTAAAGCTCCAAGTA 127460 | ||| || |||||||| || || || || ||| || || || ||| ||| || Sbjct 701 ATATTGCGGATGATGTGGGTGTATGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTC 760 Query 127461 GTGATCCAAGTCTCCAGCGCGATGTCTGACACCATTGGCAAGAAAGTCAAGTTAGGTGCG 127520 |||||| || |||||| || |||||||| ||||| || | || |||||| Sbjct 761 TCGATCCAGGTTTCCAGCTCGGGCAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTA 820 Query 127521 CGACCCTGAACAGAATCAAGCAGACTTTGATATTTCAAGTT-TTGAGTGAACACATATTG 127579 || ||||| | ||||| ||||| | ||||| |||| ||| ||| |||| | || | Sbjct 821 CGGCCCTGGATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGA-TGAAAATATGCTT 879 Query 127580 TTCGGCTTCTGTCAAGCGACTGA-AATCAATCATGTCCTTAGACAAATCGACTTCTTCGG 127638 ||| || | || || ||| | ||| ||| | |||| |||||||||||| | Sbjct 880 TTCATGCTCGGGCAGGC-CTTGATAGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTG 938 Query 127639 GGCGCCAGAAAAATGAGAGCTGTTTCTCGGTAAGCTTGTCAATGACAGGAT 127689 | |||||||| || ||||| ||||||||| | ||||| || | || |||| Sbjct 939 GACGCCAGAAGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACACCGGAT 989 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 128152 CCATCTTTCGATTGCTTGGTGCTCACTAGGCCACGCGGTGGCTCGATACCGTTTGTGCTG 128211 || ||||| || |||||| ||| |||||||||||||||||||||||||| ||| | Sbjct 1856 CCGTCTTTGGACTGCTTGACCGACACCAGGCCACGCGGTGGCTCGATACCGTTGGTGGCG 1915 Query 128212 TTGGTAATTTGGCTAGAACTTTCACACGGCATAAACGCGCTCAGTGTGTCATTGCGCATA 128271 |||| || ||||| || | || | ||||| | |||| |||| ||| || |||| Sbjct 1916 TTGGCGATCTGGCTGGACGTCTCTGAAGGCATCAGCGCGGTCAGGGTGGAGTTACGCAAG 1975 Query 128272 CCGTACTTTTTAATCTCGCCACGTAGCCATTCCCAATC 128309 || | || | ||||||| | || || | |||||| || Sbjct 1976 CCATCTTTCTGAATCTCGGCGCGCAGGCTTTCCCAGTC 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720645968339040