Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014636.1
Length=225268
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 165 1e-35
seq3915 111 2e-19
>seq2003
Length=7520
Score = 165 bits (182), Expect = 1e-35
Identities = 288/414 (70%), Gaps = 4/414 (1%)
Strand=Plus/Minus
Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115
||||||| ||||| || | || || || ||||| || | ||||||||||| ||||
Sbjct 7094 ACATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGC 7035
Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175
| ||| || || ||||| || | | ||| ||||| |||||||||| ||||| | |
Sbjct 7034 CGCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACA 6975
Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235
|| || || || || || ||||| ||||| || ||| || ||||||| ||||||
Sbjct 6974 ACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACA 6915
Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGAT-CCC 129294
||| | || || | |||||||||| || |||| |||| ||| || | | | |||
Sbjct 6914 GTTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTAT-CTCGCTGCCC 6856
Query 129295 TCGGCACGAAT-CGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATATAGTCAAC 129353
|| || || || ||| |||||| ||| || || ||||||| || ||| | ||
Sbjct 6855 AGCGCGCGGATGCGGCCCG-CGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCAC 6797
Query 129354 GATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACACA 129413
||| | || | ||| || |||||||| ||||| ||| |||| |||||| || ||
Sbjct 6796 GATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCA 6737
Query 129414 AGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467
||||| ||||| || || || || || ||||| || | || || || |||||
Sbjct 6736 GGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAG 6683
>seq3915
Length=2367
Score = 111 bits (122), Expect = 2e-19
Identities = 423/651 (65%), Gaps = 26/651 (4%)
Strand=Plus/Plus
Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114
||||||||| ||||||||| ||| ||||||||||| || |||||||| || ||
Sbjct 349 CTGGGTGCCGGTGAGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATGATCTTGGCATT 408
Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174
||||||||||| ||| |||||||||| ||| | |||||| ||||| || ||||| ||
Sbjct 409 GCCTTCCATCACCTTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTGACGTAAAAGCG 468
Query 127175 AATCGCTTCCAAAGCGTTTACCGCGTGTTTGGCGAGATACAGAGCTTCTTTTACTTTAGT 127234
|| |||| | | | || || | ||| || ||||| ||||| |
Sbjct 469 GATGGCTT-CGAGGATATTGACGTTCATCAGGC-AGCGGTAGAGCAGCTTTTTCAGCGCA 526
Query 127235 CAGTTGTTGA--ACTTGCAGACCAGCC-GGGAATACTTGACAGCACAACATATCATAGGT 127291
| ||||||| |||| | | ||| || || ||| || | | | || |
Sbjct 527 CGCTTGTTGACCACTT-TGGTCTCGCCATTGATGACATGATTGC----CCTCACCCAGTT 581
Query 127292 GCG----------TTTCTCGCGAATCAGATCGTCGTAATACTGAGTCACGGCAGTGGCGC 127341
||| ||| | ||||| || |||||||| || | | | || || |
Sbjct 582 GCGAATACAACATGGTCTGCTGGATCAGCTCATCGTAATAATGGGCGATATCTGTCGCAC 641
Query 127342 GTTTCATGATCTTTTCATCGAGCATGATCCTATCAAACACTTCGGTCGGATTCACATAC- 127400
| |||| ||||||| | ||| ||| |||||||| | | || ||| ||
Sbjct 642 GCGCGGTGATGTTTTCATTGCGCACGATGTCATCAAACATGACAGAAGG-GTCATTGACG 700
Query 127401 AGATTCCGCATGATGTGAGTATACGAACGGCTGTGAATCGTTTCACTAAAGCTCCAAGTA 127460
| ||| || |||||||| || || || || ||| || || || ||| ||| ||
Sbjct 701 ATATTGCGGATGATGTGGGTGTATGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTC 760
Query 127461 GTGATCCAAGTCTCCAGCGCGATGTCTGACACCATTGGCAAGAAAGTCAAGTTAGGTGCG 127520
|||||| || |||||| || |||||||| ||||| || | || ||||||
Sbjct 761 TCGATCCAGGTTTCCAGCTCGGGCAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTA 820
Query 127521 CGACCCTGAACAGAATCAAGCAGACTTTGATATTTCAAGTT-TTGAGTGAACACATATTG 127579
|| ||||| | ||||| ||||| | ||||| |||| ||| ||| |||| | || |
Sbjct 821 CGGCCCTGGATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGA-TGAAAATATGCTT 879
Query 127580 TTCGGCTTCTGTCAAGCGACTGA-AATCAATCATGTCCTTAGACAAATCGACTTCTTCGG 127638
||| || | || || ||| | ||| ||| | |||| |||||||||||| |
Sbjct 880 TTCATGCTCGGGCAGGC-CTTGATAGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTG 938
Query 127639 GGCGCCAGAAAAATGAGAGCTGTTTCTCGGTAAGCTTGTCAATGACAGGAT 127689
| |||||||| || ||||| ||||||||| | ||||| || | || ||||
Sbjct 939 GACGCCAGAAGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACACCGGAT 989
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 128152 CCATCTTTCGATTGCTTGGTGCTCACTAGGCCACGCGGTGGCTCGATACCGTTTGTGCTG 128211
|| ||||| || |||||| ||| |||||||||||||||||||||||||| ||| |
Sbjct 1856 CCGTCTTTGGACTGCTTGACCGACACCAGGCCACGCGGTGGCTCGATACCGTTGGTGGCG 1915
Query 128212 TTGGTAATTTGGCTAGAACTTTCACACGGCATAAACGCGCTCAGTGTGTCATTGCGCATA 128271
|||| || ||||| || | || | ||||| | |||| |||| ||| || ||||
Sbjct 1916 TTGGCGATCTGGCTGGACGTCTCTGAAGGCATCAGCGCGGTCAGGGTGGAGTTACGCAAG 1975
Query 128272 CCGTACTTTTTAATCTCGCCACGTAGCCATTCCCAATC 128309
|| | || | ||||||| | || || | |||||| ||
Sbjct 1976 CCATCTTTCTGAATCTCGGCGCGCAGGCTTTCCCAGTC 2013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 720645968339040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |