Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 104 9e-17
>seq1470
Length=11388
Score = 104 bits (114), Expect = 9e-17
Identities = 284/427 (67%), Gaps = 6/427 (1%)
Strand=Plus/Minus
Query 452069 GATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATG 452128
||| ||||| | | |||||| ||||| | || |||||| | || || || || ||| |
Sbjct 9030 GATCTTCTGCTGTTGGATGTAGCACCTTTGTCGCTTGGATTGGAGACGGCAGGCGGAGTC 8971
Query 452129 ATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGT 452188
||||| || | ||| ||| ||| | | ||| || ||| || ||||
Sbjct 8970 ATGACCAAGCTCATTCCACGCAACACTACGGTCCCTGCAAAGAAGTCGCAGTCATTCTCG 8911
Query 452189 ACAGCAAGT-GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247
|| | | | ||||| || || |||||| || || ||||||||||| || || || ||
Sbjct 8910 AC-GTATGCCGATAATCAGCCTGGTGTACTGATCCAGGTGTTTGAAGGTGAGCGGGCGAT 8852
Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA-AACATTCCTCCTATGCCAA 452306
|||||| ||||| || ||||| | |||| ||| | |||||| ||||||||
Sbjct 8851 GACACGCGATAACCATCTTCTAGGCAAGTTTA-GCTTGGACGGCATTCCGCCTATGCCGC 8793
Query 452307 GGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGA 452366
| || ||||| ||||| | || | ||| || |||| ||||| ||||| || |||
Sbjct 8792 GTGGTGTGCCTCAGATTGACGTCACATTTGACGTGGATGTGAATGGCATTCTAAACGTGT 8733
Query 452367 GTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAAC 452425
|| || || || || | || ||| |||| || || || ||||| |||||||||
Sbjct 8732 CAGCCGTCGAGAAGTCGACGGGGAAA-GAGAACAAGATCACGATTACAAATGATAAAGGT 8674
Query 452426 CGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGAT 452485
|| |||| | | || ||||| ||||| | || || || | | |||||| |
Sbjct 8673 CGGCTATCACAGGCCGAGATTGATCGCATGGTGAACGATGCGGAGACGTACAAGGACCAA 8614
Query 452486 GATGAAC 452492
|||||||
Sbjct 8613 GATGAAC 8607
Score = 84.2 bits (92), Expect = 9e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278
||||||||| || |||| || ||||| || || || || ||||| || | || ||
Sbjct 9877 TAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCAAGAT 9818
Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338
| || | || ||| |||||||| | ||| | ||||||| | || || ||
Sbjct 9817 GCGTGAGATTGCGGAAGCTTATATTGGCAAGCAAGTGAGGAATGCAGTGGTGACGGTCCC 9758
Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398
|| || ||||| || | ||||| || || || |||||||| ||| |||||||||||
Sbjct 9757 TGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCTGGTTT 9698
Query 451399 AAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
|| || || || ||||| || || || || || || ||
Sbjct 9697 GAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGC 9659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975483411140564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |