Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1470 104 9e-17 >seq1470 Length=11388 Score = 104 bits (114), Expect = 9e-17 Identities = 284/427 (67%), Gaps = 6/427 (1%) Strand=Plus/Minus Query 452069 GATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATG 452128 ||| ||||| | | |||||| ||||| | || |||||| | || || || || ||| | Sbjct 9030 GATCTTCTGCTGTTGGATGTAGCACCTTTGTCGCTTGGATTGGAGACGGCAGGCGGAGTC 8971 Query 452129 ATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGT 452188 ||||| || | ||| ||| ||| | | ||| || ||| || |||| Sbjct 8970 ATGACCAAGCTCATTCCACGCAACACTACGGTCCCTGCAAAGAAGTCGCAGTCATTCTCG 8911 Query 452189 ACAGCAAGT-GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAAT 452247 || | | | ||||| || || |||||| || || ||||||||||| || || || || Sbjct 8910 AC-GTATGCCGATAATCAGCCTGGTGTACTGATCCAGGTGTTTGAAGGTGAGCGGGCGAT 8852 Query 452248 GACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA-AACATTCCTCCTATGCCAA 452306 |||||| ||||| || ||||| | |||| ||| | |||||| |||||||| Sbjct 8851 GACACGCGATAACCATCTTCTAGGCAAGTTTA-GCTTGGACGGCATTCCGCCTATGCCGC 8793 Query 452307 GGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGA 452366 | || ||||| ||||| | || | ||| || |||| ||||| ||||| || ||| Sbjct 8792 GTGGTGTGCCTCAGATTGACGTCACATTTGACGTGGATGTGAATGGCATTCTAAACGTGT 8733 Query 452367 GTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAAC 452425 || || || || || | || ||| |||| || || || ||||| ||||||||| Sbjct 8732 CAGCCGTCGAGAAGTCGACGGGGAAA-GAGAACAAGATCACGATTACAAATGATAAAGGT 8674 Query 452426 CGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGAT 452485 || |||| | | || ||||| ||||| | || || || | | |||||| | Sbjct 8673 CGGCTATCACAGGCCGAGATTGATCGCATGGTGAACGATGCGGAGACGTACAAGGACCAA 8614 Query 452486 GATGAAC 452492 ||||||| Sbjct 8613 GATGAAC 8607 Score = 84.2 bits (92), Expect = 9e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278 ||||||||| || |||| || ||||| || || || || ||||| || | || || Sbjct 9877 TAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCAAGAT 9818 Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338 | || | || ||| |||||||| | ||| | ||||||| | || || || Sbjct 9817 GCGTGAGATTGCGGAAGCTTATATTGGCAAGCAAGTGAGGAATGCAGTGGTGACGGTCCC 9758 Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398 || || ||||| || | ||||| || || || |||||||| ||| ||||||||||| Sbjct 9757 TGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCTGGTTT 9698 Query 451399 AAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || || || || ||||| || || || || || || || Sbjct 9697 GAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGC 9659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975483411140564