Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1470 208 6e-48 seq311 89.7 4e-12 >seq1470 Length=11388 Score = 208 bits (230), Expect = 6e-48 Identities = 934/1460 (64%), Gaps = 31/1460 (2%) Strand=Plus/Plus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || ||| ||||| || || || || ||| || || || || |||| | ||| || Sbjct 8680 ATCATTTGTAATCGTGATCTTGTTCTCTTTCCCCGTCGACTTCTCGACGGCTGACACGTT 8739 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 ||||| ||||| |||||| ||||||||||| ||||| ||||| || || | | | Sbjct 8740 TAGAATGCCATTCACATCCACGTCAAATGTGACGTCAATCTGAGGCACACCACGCGGCAT 8799 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| || || || ||||| |||| | || ||| || ||||| || | || Sbjct 8800 AGGCGGAATGCCGTCCAAGCTAAACTTGCCTAGAAGATGGTTATCGCGTGTCATCGCCCG 8859 Query 517390 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT- 517447 ||||| || || | ||||| |||| | ||| |||||||| | ||| || | ||| Sbjct 8860 CTCACCTTCAAACACCTGGATCAGTA-CACCAGGCTGATTATCGGCATACGTCGAGAATG 8918 Query 517448 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507 ||| | || ||| || ||| || ||||| | ||| | |||||||| | || Sbjct 8919 ACTGCGACTTCTTTGCAGGGACC-GTAGTGTTGCGTGGAATGAGCTTGGTCATGACTCCG 8977 Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567 ||||| || || || ||||| || | ||| | ||||| | || | || || || || Sbjct 8978 CCTGCCGTCTCCAATCCAAGCGACAAAGGTGCTACATCCAACAGCAGAAGATCCTGCAGC 9037 Query 517568 TTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 || | | ||| || ||||| || ||||| | | || ||||| || ||| Sbjct 9038 TTGGAAGAGGCCCCACCGCCACTCAGAATTGCAGCTTGGACGGTCGCTCCATACGCCACA 9097 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 ||||| || ||||||| | | | || || || || || || |||| || | Sbjct 9098 GCTTCGTCCGGATTAATCGACTTAAATAATTCCTTTCCGTTAAAGAAATCGATCAGCAAC 9157 Query 517685 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| ||||| || || |||| || || || || | || || |||||||| | | Sbjct 9158 TGTTGCACCTTTGGGATGCGAGTGGAGCCACCGACCAGGACGATCTCATGCACTTCGCCT 9217 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || ||| || || || ||||||| | || || || | | | ||| || Sbjct 9218 TTCGACAGCTTCGAGTCGCGCAAAACTTGGGCGACTGGCTCCATTGTCTTGCGAAAGAAA 9277 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || | || || || || ||| | |||| |||| || || |||| || || || Sbjct 9278 TCGGCGCATAGATCCTCAAATCTCGCTCGCGTAATGGTCGTGTTGAAATCGATGCCGTCA 9337 Query 517865 AACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923 | | ||||||| ||||| ||| | ||| | |||| || | | || || | || Sbjct 9338 AGAAGCGAATCAATCTCAAT-GTACGCTTGCGCAGAAGTGGACAAGGTCCGCTTGGATCG 9396 Query 517924 TTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTA 517981 || ||||| || | |||| || | ||| | || || | ||| |||| | | Sbjct 9397 CTCGCATGCCGTACGCAGTCGACGCAGGGCACGT--TGGTTCAACGTCATATCTTTGCGA 9454 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCAC 518039 | || | |||||| || ||| | ||| | ||||| || || ||||| ||||||| Sbjct 9455 TGCTTACGCTTGAACTCGGAGACAAA--ATGATCCACAAGGCGGTTGTCAAAGTCTTCAC 9512 Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099 | ||||| | || | || | || ||| | || | || | || || |||| || Sbjct 9513 CGCCCAAATGCGTGTCACCGGCAGTGGCTTTCACCTCAAAGATGCCGTCCTCAATGCTCA 9572 Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159 | || | || ||| || || || |||| ||| || || || ||||| ||| | Sbjct 9573 ACAGCGACACGTCAAACGTGCCGCCGCCCAGATCGAAGATTAGCACATTGTGTTCGCCGC 9632 Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 | | | || || || || || || | || ||||| ||||| || || ||||| | || Sbjct 9633 CCT---TCTTGTCCAGGCCGTAGGCGATCGCGGCAGCCGTTGGCTCGTTGATAATACGCA 9689 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 || || | ||||||||| ||| |||||||| || || || | ||| || ||||| | Sbjct 9690 GCACGTTCAAACCAGCAATGGCTCCAGCATCTTTGGTCGCCTGACGTTGCGAGTCGTTGA 9749 Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339 | |||||||| || || | || |||| | |||| || ||||||||||| || Sbjct 9750 AGTATGCAGGGACCGTCACCACTGCATTCCTCACTTGCTTGCCAATATAAGCTTCCGCAA 9809 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGA 518397 | | ||| || | | | ||| || || || | || || |||| || |||| Sbjct 9810 TCTCACGCATCTTGATCAGCACCATGGACGAGATCTCCTCAGGCTGGAACCTT--TTGGT 9867 Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTTTAAA 518454 ||| || | | ||||| | | ||||| | | | | | | || || || Sbjct 9868 CTCACCTTTAAACTGCACTTCCACCTGAGGTTTGTCCGCCGAATCTCGAGTCACCTTGAA 9927 Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTT-TGG-TCATTAAAATCTCTACCAATTAAT 518512 ||||| | ||| || || || || ||||| ||| ||| ||| | | || || || Sbjct 9928 CGGCCAATGTTTAATGTCCGACTG--CACTTCTGGATCAGAAAACTTGCGTCCGATCAAA 9985 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || ||||| || | || ||| || || || ||| |||| | || |||||||| Sbjct 9986 CGCTTGGCATCGAACACCGTGTTGTGTGCGTTCATAGCAACTTGGTTCTTCGCTGCATCA 10045 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 ||||||||| | |||| ||| ||||| | ||||| ||||| || ||||| || ||||| Sbjct 10046 CCAATCAGACGCTCTGACTCCGTAAACGCCACATACGATGGCGTCGTGCGGTTTCCTTGG 10105 Query 518633 TCATTCGCAATAATTTCAAC 518652 || ||||||||||| || || Sbjct 10106 TCGTTCGCAATAATCTCCAC 10125 >seq311 Length=43657 Score = 89.7 bits (98), Expect = 4e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||||||||| ||||| | || ||||||||||| || ||||| || | || |||||| Sbjct 20507 GGTAAAGAAGGACGTATCCGCGGTAATTTGATGGGCAAGCGTGTAGACTTTTCGGCACGT 20566 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966 || |||||||| |||| || |||||||| | | |||| || ||||||| Sbjct 20567 ACGGTTATTACCGCTGACCCGAATATTGCAATTGACCAAGTGGGCGTTCCTC 20618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780361746961798