Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 208 6e-48
seq311 89.7 4e-12
>seq1470
Length=11388
Score = 208 bits (230), Expect = 6e-48
Identities = 934/1460 (64%), Gaps = 31/1460 (2%)
Strand=Plus/Plus
Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269
|| ||| ||||| || || || || ||| || || || || |||| | ||| ||
Sbjct 8680 ATCATTTGTAATCGTGATCTTGTTCTCTTTCCCCGTCGACTTCTCGACGGCTGACACGTT 8739
Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329
||||| ||||| |||||| ||||||||||| ||||| ||||| || || | | |
Sbjct 8740 TAGAATGCCATTCACATCCACGTCAAATGTGACGTCAATCTGAGGCACACCACGCGGCAT 8799
Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389
||| || || || ||||| |||| | || ||| || ||||| || | ||
Sbjct 8800 AGGCGGAATGCCGTCCAAGCTAAACTTGCCTAGAAGATGGTTATCGCGTGTCATCGCCCG 8859
Query 517390 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT- 517447
||||| || || | ||||| |||| | ||| |||||||| | ||| || | |||
Sbjct 8860 CTCACCTTCAAACACCTGGATCAGTA-CACCAGGCTGATTATCGGCATACGTCGAGAATG 8918
Query 517448 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507
||| | || ||| || ||| || ||||| | ||| | |||||||| | ||
Sbjct 8919 ACTGCGACTTCTTTGCAGGGACC-GTAGTGTTGCGTGGAATGAGCTTGGTCATGACTCCG 8977
Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567
||||| || || || ||||| || | ||| | ||||| | || | || || || ||
Sbjct 8978 CCTGCCGTCTCCAATCCAAGCGACAAAGGTGCTACATCCAACAGCAGAAGATCCTGCAGC 9037
Query 517568 TTTTCATCAGTTTGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624
|| | | ||| || ||||| || ||||| | | || ||||| || |||
Sbjct 9038 TTGGAAGAGGCCCCACCGCCACTCAGAATTGCAGCTTGGACGGTCGCTCCATACGCCACA 9097
Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684
||||| || ||||||| | | | || || || || || || |||| || |
Sbjct 9098 GCTTCGTCCGGATTAATCGACTTAAATAATTCCTTTCCGTTAAAGAAATCGATCAGCAAC 9157
Query 517685 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744
||| ||||| || || |||| || || || || | || || |||||||| | |
Sbjct 9158 TGTTGCACCTTTGGGATGCGAGTGGAGCCACCGACCAGGACGATCTCATGCACTTCGCCT 9217
Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804
|| ||| || || || ||||||| | || || || | | | ||| ||
Sbjct 9218 TTCGACAGCTTCGAGTCGCGCAAAACTTGGGCGACTGGCTCCATTGTCTTGCGAAAGAAA 9277
Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864
|| | || || || || ||| | |||| |||| || || |||| || || ||
Sbjct 9278 TCGGCGCATAGATCCTCAAATCTCGCTCGCGTAATGGTCGTGTTGAAATCGATGCCGTCA 9337
Query 517865 AACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923
| | ||||||| ||||| ||| | ||| | |||| || | | || || | ||
Sbjct 9338 AGAAGCGAATCAATCTCAAT-GTACGCTTGCGCAGAAGTGGACAAGGTCCGCTTGGATCG 9396
Query 517924 TTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTA 517981
|| ||||| || | |||| || | ||| | || || | ||| |||| | |
Sbjct 9397 CTCGCATGCCGTACGCAGTCGACGCAGGGCACGT--TGGTTCAACGTCATATCTTTGCGA 9454
Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCAC 518039
| || | |||||| || ||| | ||| | ||||| || || ||||| |||||||
Sbjct 9455 TGCTTACGCTTGAACTCGGAGACAAA--ATGATCCACAAGGCGGTTGTCAAAGTCTTCAC 9512
Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099
| ||||| | || | || | || ||| | || | || | || || |||| ||
Sbjct 9513 CGCCCAAATGCGTGTCACCGGCAGTGGCTTTCACCTCAAAGATGCCGTCCTCAATGCTCA 9572
Query 518100 AAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGT 518159
| || | || ||| || || || |||| ||| || || || ||||| ||| |
Sbjct 9573 ACAGCGACACGTCAAACGTGCCGCCGCCCAGATCGAAGATTAGCACATTGTGTTCGCCGC 9632
Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219
| | | || || || || || || | || ||||| ||||| || || ||||| | ||
Sbjct 9633 CCT---TCTTGTCCAGGCCGTAGGCGATCGCGGCAGCCGTTGGCTCGTTGATAATACGCA 9689
Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279
|| || | ||||||||| ||| |||||||| || || || | ||| || ||||| |
Sbjct 9690 GCACGTTCAAACCAGCAATGGCTCCAGCATCTTTGGTCGCCTGACGTTGCGAGTCGTTGA 9749
Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339
| |||||||| || || | || |||| | |||| || ||||||||||| ||
Sbjct 9750 AGTATGCAGGGACCGTCACCACTGCATTCCTCACTTGCTTGCCAATATAAGCTTCCGCAA 9809
Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGA 518397
| | ||| || | | | ||| || || || | || || |||| || ||||
Sbjct 9810 TCTCACGCATCTTGATCAGCACCATGGACGAGATCTCCTCAGGCTGGAACCTT--TTGGT 9867
Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTTTAAA 518454
||| || | | ||||| | | ||||| | | | | | | || || ||
Sbjct 9868 CTCACCTTTAAACTGCACTTCCACCTGAGGTTTGTCCGCCGAATCTCGAGTCACCTTGAA 9927
Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTT-TGG-TCATTAAAATCTCTACCAATTAAT 518512
||||| | ||| || || || || ||||| ||| ||| ||| | | || || ||
Sbjct 9928 CGGCCAATGTTTAATGTCCGACTG--CACTTCTGGATCAGAAAACTTGCGTCCGATCAAA 9985
Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572
|| || ||||| || | || ||| || || || ||| |||| | || ||||||||
Sbjct 9986 CGCTTGGCATCGAACACCGTGTTGTGTGCGTTCATAGCAACTTGGTTCTTCGCTGCATCA 10045
Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632
||||||||| | |||| ||| ||||| | ||||| ||||| || ||||| || |||||
Sbjct 10046 CCAATCAGACGCTCTGACTCCGTAAACGCCACATACGATGGCGTCGTGCGGTTTCCTTGG 10105
Query 518633 TCATTCGCAATAATTTCAAC 518652
|| ||||||||||| || ||
Sbjct 10106 TCGTTCGCAATAATCTCCAC 10125
>seq311
Length=43657
Score = 89.7 bits (98), Expect = 4e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||||||||| ||||| | || ||||||||||| || ||||| || | || ||||||
Sbjct 20507 GGTAAAGAAGGACGTATCCGCGGTAATTTGATGGGCAAGCGTGTAGACTTTTCGGCACGT 20566
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTC 668966
|| |||||||| |||| || |||||||| | | |||| || |||||||
Sbjct 20567 ACGGTTATTACCGCTGACCCGAATATTGCAATTGACCAAGTGGGCGTTCCTC 20618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780361746961798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |