Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014661.1
Length=164093
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 140 3e-28
>seq2003
Length=7520
Score = 140 bits (154), Expect = 3e-28
Identities = 294/437 (67%), Gaps = 6/437 (1%)
Strand=Plus/Minus
Query 141456 TTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTC 141515
||||| || | ||||||||| | ||||| | |||||||||||| || || ||||||
Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024
Query 141516 TTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAA 141575
|||| ||| | || ||| |||||||||||||||| ||| |||||| || ||||
Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964
Query 141576 CCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAA 141635
|| || | ||| || || || ||| | | ||||| || | || | || ||||
Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904
Query 141636 GGTACTACGCCAGTGTGTTTGACTTCGCCTGGGCCA---ATTTTCGAACCTTCAGCTCGA 141692
|| | || || |||| ||||||| |||| || | || || ||
Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCC---GCCACGTATCTCGCTGCCCAGCGCGCGG 6847
Query 141693 ATCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAG 141752
|| ||| ||||| | || || || || || | || |||||||| || || || |
Sbjct 6846 ATGCGGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTG 6787
Query 141753 TTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAAT 141812
| | ||||||| ||| ||||||||| || | || || | ||| || || |||||
Sbjct 6786 GTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAAC 6727
Query 141813 TGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTT 141872
|| || || || ||||| ||||| ||||| || || ||||||| |||||| || ||
Sbjct 6726 TGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTA 6667
Query 141873 GAAACAGCTTCATAAAA 141889
|| || || || |||||
Sbjct 6666 GACACCGCATCGTAAAA 6650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 524908683840040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |