Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq2003 140 3e-28 >seq2003 Length=7520 Score = 140 bits (154), Expect = 3e-28 Identities = 294/437 (67%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 141456 TTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTC 141515 ||||| || | ||||||||| | ||||| | |||||||||||| || || |||||| Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024 Query 141516 TTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAA 141575 |||| ||| | || ||| |||||||||||||||| ||| |||||| || |||| Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964 Query 141576 CCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAA 141635 || || | ||| || || || ||| | | ||||| || | || | || |||| Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904 Query 141636 GGTACTACGCCAGTGTGTTTGACTTCGCCTGGGCCA---ATTTTCGAACCTTCAGCTCGA 141692 || | || || |||| ||||||| |||| || | || || || Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCC---GCCACGTATCTCGCTGCCCAGCGCGCGG 6847 Query 141693 ATCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAG 141752 || ||| ||||| | || || || || || | || |||||||| || || || | Sbjct 6846 ATGCGGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTG 6787 Query 141753 TTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAAT 141812 | | ||||||| ||| ||||||||| || | || || | ||| || || ||||| Sbjct 6786 GTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAAC 6727 Query 141813 TGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTT 141872 || || || || ||||| ||||| ||||| || || ||||||| |||||| || || Sbjct 6726 TGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTA 6667 Query 141873 GAAACAGCTTCATAAAA 141889 || || || || ||||| Sbjct 6666 GACACCGCATCGTAAAA 6650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524908683840040