Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq2003 159 4e-34 >seq2003 Length=7520 Score = 159 bits (176), Expect = 4e-34 Identities = 336/499 (67%), Gaps = 8/499 (2%) Strand=Plus/Minus Query 137843 ATCCGGAGAGAACAGAGTGATGTAGTCGTCTTTAATCAGACGTTCAAACATCAGGTCGTT 137902 || ||| || ||||||||||||| | | | || ||||| || | |||||||| ||| Sbjct 7141 ATGCGGTGAAAACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTT 7082 Query 137903 GATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTT 137962 ||| || || |||||||| | ||||| | |||||||| |||||||| |||||| || Sbjct 7081 GATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTT 7022 Query 137963 AAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCGCC 138022 || || || || || |||||||||||||| | || ||| |||| |||||||| || Sbjct 7021 CAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCC 6962 Query 138023 ACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGG 138082 ||| || || ||||| || || || || || || || | |||| |||| |||| || Sbjct 6961 ACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGG 6902 Query 138083 AATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCAT 138142 | || ||||| | |||| ||| | || | || || || || Sbjct 6901 CAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCG 6842 Query 138143 ACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCTGA 138202 || ||||| | ||| || || || |||| |||| |||| || ||| |||| Sbjct 6841 GCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCAC----GATCGCGCTGG 6786 Query 138203 T--TTG--TTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATT 138258 | ||| || || | ||| ||| || || || | ||||| || ||||| | Sbjct 6785 TGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACT 6726 Query 138259 GACGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTTCTTAGTTG 138318 | || ||||||||||| |||| |||||||| || || ||||| || || || || | Sbjct 6725 GGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAG 6666 Query 138319 ACACAGCATCATAAAAACG 138337 |||| ||||| ||||| || Sbjct 6665 ACACCGCATCGTAAAAGCG 6647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529538546540000