Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8027 102 1e-16 seq391 98.7 1e-15 seq1591 95.1 1e-14 seq4319 91.5 2e-13 seq69 87.8 2e-12 >seq8027 Length=1067 Score = 102 bits (112), Expect = 1e-16 Identities = 280/424 (66%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || |||||||| || ||||| | || | |||||| || | Sbjct 459 CGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATGGAGGTC 400 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || ||||| | || || |||||||||| || | |||||||||||| ||| || Sbjct 399 AGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAGATAAAG 340 Query 109528 CGACCACGATCAGCCGCCATGTCGATGA-TACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 ||||| ||||| ||||| ||||| | ||| || | ||||||||||| || || Sbjct 339 GCGCCACGGTCAGCTGCCATATCGATCAGGGCAC-GCTGCTTGATTTCCCAGACGGTTTT 281 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTT 109646 ||| | | |||||| | || ||||| || || ||||| || ||| || Sbjct 280 GTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGATCCATTGGCAGC 221 Query 109647 CACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAG 109706 | || || || | | | | ||| ||||| | || | ||| | || Sbjct 220 AATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAAGTCGCGCAGCAG 161 Query 109707 ATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 ||| ||||| || || | ||| ||||| | |||| ||| ||| |||| ||||| | Sbjct 160 ATGTTTGTTAACAACAATAAACTCACCGGACAAG-ACGCGGCGGGTATAGAGGTTAGATG 102 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGG 109825 | ||||| || |||||||| || ||||| || || || | || ||||| || ||||||| Sbjct 101 TATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGCAGTCGGCATGG 42 Query 109826 GAGC 109829 | || Sbjct 41 GCGC 38 >seq391 Length=86401 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || |||||||||||||| ||||| || || ||||| ||| ||||| || | | ||| Sbjct 79805 ACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGAAC 79746 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || ||||| | || ||||| ||||||||||| | || | || ||||| Sbjct 79745 AGGTCGCGCACACGGGATGGGCCTACACCAACGAACATCTCGATAAAATCTGATCCAGAA 79686 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 || ||| || || ||| ||||| || ||||| || || || ||||| || Sbjct 79685 ATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTGCCT 79626 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||| | || | || ||||| || |||||||||||||| Sbjct 79625 GTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 79579 >seq1591 Length=10447 Score = 95.1 bits (104), Expect = 1e-14 Identities = 266/400 (67%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| || || || | | || | ||| || | ||| ||||||| || || Sbjct 1357 CGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGTTGCA 1298 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || || || | | ||| | | | || ||||| ||||| || | | |||||| Sbjct 1297 GCGATCACAATCACGCCGGAGTTAGCCTCAAAACCATCCATCTCCACCAACATCTGGTTC 1238 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTTACCG 11679 | || ||||||||||| ||||| | | |||| ||||| ||| | ||| Sbjct 1237 AATGTTTGTTCACGCTCGTCGTT--ACCACC-ACCAGTACCTGCACCACGATGACGACCT 1181 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG-TTCGAA 11738 |||||||||||||||||||| || | |||||| || | | | || ||| ||| || Sbjct 1180 ACAGCGTCAATCTCATCGATAAAAATGATACAAGG-CGCATTTTTCTTGGCTGTTTCAAA 1122 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG- 11797 | ||||| || || ||| || ||||| || |||||||| || |||| | | | Sbjct 1121 CATGTCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGA 1062 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 || |||||| ||| || || || | |||||| || || || || || || | || |||| Sbjct 1061 AATACTGAA-GAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTAC 1003 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT 11897 | || ||||||| || | | || ||||||| || || Sbjct 1002 CTGTCCCAGGTGGGCCCACCATCAGTACGCCACGCGGAAT 963 >seq4319 Length=2037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 357/555 (64%), Gaps = 40/555 (7%) Strand=Plus/Minus Query 11428 AGCGTTTTGTCCCTCGCATGAACACCCAAAATCTTCCTGCGTCCTTGAACACTGGGGAGA 11487 |||| |||| | | |||||||| | |||||| ||| |||| ||| | ||| Sbjct 1447 AGCGGCTTGTTCTTGGCATGAACCTGAAGAATCTTTTCGCGGCCTTCAACG-TCAGGACG 1389 Query 11488 GTCACCTGAATC---TTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATA 11544 |||| | |||| | || || || || || || || || | ||| ||||||||||| Sbjct 1388 GTCAAC--AATCACCTGGCGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATA 1331 Query 11545 TCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCC 11601 || ||||| || || ||||| || ||| | | |||||| || |||||| Sbjct 1330 TCAGGGCGGTTCGTTGCAGCAATCAC---AATCGTTGAGTGATTGTCTTCAAAGCCGTCC 1274 Query 11602 ATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC--AC 11659 ||||| | || | |||||| | || ||||| |||||||| | || || || || Sbjct 1273 ATTTCAATCAGCAACTGGTTAAGGGTTTGTTCGCGCTCATCAT--GACCGCCGCCCATAC 1216 Query 11660 CTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACG------ 11713 |||| ||||| ||| || |||||||| || ||||| || | | ||| | Sbjct 1215 CTGCACCACGCTGACGACCAACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCAT 1156 Query 11714 GTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGA 11773 ||| ||| ||||| || || | ||||| || || || || ||||| || | Sbjct 1155 GTTTTTTG------GCCTGGTCAAACAAGTCACGGACTCGAGAAGCACCCACACCCACAA 1102 Query 11774 ACATCTCAACGAAGTTTGCGGCAGAA-CACTG-----AATGAAGGGAACATTAGACTCAC 11827 |||| ||||| || | ||||| ||||| || ||| || ||| || ||||| Sbjct 1101 ACATTTCAACAAATT------CAGAACCACTGATGCTAAAGAAAGGCACAGAAGCCTCAC 1048 Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887 |||| | ||| ||| | | || ||||| |||||||| | || | || | | ||| Sbjct 1047 CAGCAACTGCTTTAGCAATCAAGGTTTTACCTGTACCAGGCGGGCCTACAAGCAAGACGC 988 Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | || |||||||| ||| | || ||||| || |||||||| |||| Sbjct 987 CTTTAGGAATCTTGGCGCCAAGGGCCTGATATTTATCAGGAGATTTTAGGAAGTCGACAA 928 Query 11948 TCTCCTCAAGTTCCT 11962 | || || ||||||| Sbjct 927 TTTCTTCGAGTTCCT 913 >seq69 Length=63067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/186 (71%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| ||| |||||||| || ||||| || ||||||||||| || | ||| Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||||||||| | || || || || ||||| ||||| || || |||| || Sbjct 13026 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 12967 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTT----GTCGAACCACTTGAGAGCCCAGTT 119689 || | || ||||| || | | || |||| |||| |||||||||| ||||| || Sbjct 12966 GCCAGCAGCCGCTCCGC-GTACGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAATT 12908 Query 119690 GGCCTT 119695 ||| || Sbjct 12907 GGCTTT 12902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588907656697400