Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq69 125 8e-24
seq1591 104 3e-17
seq9283 87.8 2e-12
seq9280 87.8 2e-12
seq391 84.2 3e-11
>seq69
Length=63067
Score = 125 bits (138), Expect = 8e-24
Identities = 331/499 (66%), Gaps = 10/499 (2%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || || || |||||||| || ||||| ||||| || | ||| || | |||||
Sbjct 13392 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 13333
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105
|||||||||| ||||| || | |||| | ||| || | | | || ||
Sbjct 13332 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 13273
Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165
|||| ||| |||||||||||| | |||| | | |||||||| || || || | |
Sbjct 13272 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 13213
Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225
|| || | |||| | ||| | | ||| ||| || || || | ||| | ||||
Sbjct 13212 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 13153
Query 117226 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281
| || || || || | || || | | | ||| |||| |||| ||
Sbjct 13152 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 13097
Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341
| ||| | ||||||||||| ||| || || || ||||||| ||||| ||||||||
Sbjct 13096 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 13037
Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401
||| |||||||||| |||| | || | |||||| || || |||||||| || || || ||
Sbjct 13036 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 12977
Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT-TGTGTCAAACCATTTCA 117460
| ||||| || | || ||||| ||| | || || |||| || ||| |||| || |
Sbjct 12976 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 12918
Query 117461 TTGCCCATTTCGCCTTCTT 117479
||||| || || |||||
Sbjct 12917 GCGCCCAATTGGCTTTCTT 12899
>seq1591
Length=10447
Score = 104 bits (114), Expect = 3e-17
Identities = 242/365 (66%), Gaps = 0/365 (0%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || || ||||| | | || | ||| || | |||| | || || || ||
Sbjct 1357 CGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGTTGCA 1298
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
||||| |||| | || | | | ||||||||||||||||| ||| | |||||
Sbjct 1297 GCGATCACAATCACGCCGGAGTTAGCCTCAAAACCATCCATCTCCACCAACATCTGGTTC 1238
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371
| |||||||| || || || || | | ||| |||| || || || ||
Sbjct 1237 AATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACCTACA 1178
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431
|| ||||||||||| || || | ||||| || ||||| ||| ||||||| |
Sbjct 1177 GCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAACATG 1118
Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491
|| || || | | || |||||||| ||||||||||| ||||||| | | |||
Sbjct 1117 TCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGAAATA 1058
Query 9492 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551
|| ||| || || || | ||||| ||||| || ||||| || | || ||||| ||
Sbjct 1057 CTGAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTACCTGTC 998
Query 9552 CCTGG 9556
|| ||
Sbjct 997 CCAGG 993
>seq9283
Length=757
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 386 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 445
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 446 CCGGTAGGAGCTT 458
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 545 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 604
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 605 CCGGTAGGAGCTT 617
>seq9280
Length=2329
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 76 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 135
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 136 CCGGTAGGAGCTT 148
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 681 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 740
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 741 CCGGTAGGAGCTT 753
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 961 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1020
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 1021 CCGGTAGGAGCTT 1033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 1290 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1349
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 1350 CCGGTAGGAGCTT 1362
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 1796 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1855
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 1856 CCGGTAGGAGCTT 1868
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223
|||||||| ||||| |||||| |||| |||||| |||||||| | | || ||||||||||
Sbjct 2073 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 2132
Query 136224 CAGGTAGGAGCTT 136236
| |||||||||||
Sbjct 2133 CCGGTAGGAGCTT 2145
>seq391
Length=86401
Score = 84.2 bits (92), Expect = 3e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426
|||| || ||||||||||||||||| ||||| || || || | || || | |
Sbjct 79807 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 79748
Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486
| || ||||| || | | ||| |||||||| |||||||| | ||| | || | |
Sbjct 79747 ACAGGTCGCGCACACGGGATGGGCCTACACCAACGAACATCTCGATAAAATCTGATCCAG 79688
Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546
|| | ||| ||||| ||| |||||| ||| ||||| || || || ||||| |
Sbjct 79687 AAATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTGC 79628
Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
| ||||| ||| || | || ||||||||| || |||||||| ||
Sbjct 79627 CTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 79579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589912340102920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |