Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq69 125 8e-24 seq1591 104 3e-17 seq9283 87.8 2e-12 seq9280 87.8 2e-12 seq391 84.2 3e-11 >seq69 Length=63067 Score = 125 bits (138), Expect = 8e-24 Identities = 331/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||| ||||| || | ||| || | ||||| Sbjct 13392 TACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATC 13333 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||||||||| ||||| || | |||| | ||| || | | | || || Sbjct 13332 CAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAGTACAACAGGCGG 13273 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 |||| ||| |||||||||||| | |||| | | |||||||| || || || | | Sbjct 13272 TCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACG 13213 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 || || | |||| | ||| | | ||| ||| || || || | ||| | |||| Sbjct 13212 GGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGG 13153 Query 117226 ATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | || || || || | || || | | | ||| |||| |||| || Sbjct 13152 ACGCGGTCCTCGGGCAGCTTGTTCACTA-GCTTGGAGTACATGAGG--CACG-CAAAGTC 13097 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 | ||| | ||||||||||| ||| || || || ||||||| ||||| |||||||| Sbjct 13096 CGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 13037 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 ||| |||||||||| |||| | || | |||||| || || |||||||| || || || || Sbjct 13036 ACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGAC 12977 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTT-TGTGTCAAACCATTTCA 117460 | ||||| || | || ||||| ||| | || || |||| || ||| |||| || | Sbjct 12976 CGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGGGTCGCACCACTTGA 12918 Query 117461 TTGCCCATTTCGCCTTCTT 117479 ||||| || || ||||| Sbjct 12917 GCGCCCAATTGGCTTTCTT 12899 >seq1591 Length=10447 Score = 104 bits (114), Expect = 3e-17 Identities = 242/365 (66%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || || ||||| | | || | ||| || | |||| | || || || || Sbjct 1357 CGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGTTGCA 1298 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||| |||| | || | | | ||||||||||||||||| ||| | ||||| Sbjct 1297 GCGATCACAATCACGCCGGAGTTAGCCTCAAAACCATCCATCTCCACCAACATCTGGTTC 1238 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | |||||||| || || || || | | ||| |||| || || || || Sbjct 1237 AATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACCTACA 1178 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 || ||||||||||| || || | ||||| || ||||| ||| ||||||| | Sbjct 1177 GCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAACATG 1118 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || || | | || |||||||| ||||||||||| ||||||| | | ||| Sbjct 1117 TCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGAAATA 1058 Query 9492 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 || ||| || || || | ||||| ||||| || ||||| || | || ||||| || Sbjct 1057 CTGAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTACCTGTC 998 Query 9552 CCTGG 9556 || || Sbjct 997 CCAGG 993 >seq9283 Length=757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 386 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 445 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 446 CCGGTAGGAGCTT 458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 545 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 604 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 605 CCGGTAGGAGCTT 617 >seq9280 Length=2329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 76 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 135 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 136 CCGGTAGGAGCTT 148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 681 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 740 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 741 CCGGTAGGAGCTT 753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 961 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1020 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 1021 CCGGTAGGAGCTT 1033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 1290 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1349 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 1350 CCGGTAGGAGCTT 1362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 1796 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 1855 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 1856 CCGGTAGGAGCTT 1868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||||| |||| |||||| |||||||| | | || |||||||||| Sbjct 2073 GCTCTTATGGTGTAATGGTCAGCACTCTGGACTCTGAATCCAGCGATCCGGGTTCAAATC 2132 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 2133 CCGGTAGGAGCTT 2145 >seq391 Length=86401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 |||| || ||||||||||||||||| ||||| || || || | || || | | Sbjct 79807 CCACTGCGTCAATCTCATCAATGAAAACAATGCACGGAGCGTTCGCACGAGCTTCCTTGA 79748 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 | || ||||| || | | ||| |||||||| |||||||| | ||| | || | | Sbjct 79747 ACAGGTCGCGCACACGGGATGGGCCTACACCAACGAACATCTCGATAAAATCTGATCCAG 79688 Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 || | ||| ||||| ||| |||||| ||| ||||| || || || ||||| | Sbjct 79687 AAATGCTAAAGAACGGGACGCTAGCTTCACCGGCAGTGGCTTTCGCCAGCAGCGTCTTGC 79628 Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 | ||||| ||| || | || ||||||||| || |||||||| || Sbjct 79627 CTGTACCAGGCGGGCCTACCAGCAGGGCACCCTTCGGGATCTTGGCACC 79579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589912340102920