Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq6744 163 7e-36 >seq6744 Length=1221 Score = 163 bits (180), Expect = 7e-36 Identities = 207/278 (74%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 9480 GGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCG---TCCACGAAGAACGCCGG- 9535 |||||| |||||||||| ||| | ||| ||||||| || || ||||||||| | Sbjct 389 GGCACGGTGGTGGATGCCACGCTGATCG---CTGCGCCCAGCTCGACCAAGAACGCCAGC 333 Query 9536 GAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCAT 9595 | ||| ||||||| ||||||||||||| ||||||||| | | |||||||||||||| Sbjct 332 GGCCAGC-GTGACCCCGAGATGCATCAGAGCAAGAAGGGCCAACAGTGGTATTTCGGCAT 274 Query 9596 GAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGC 9655 |||||||||| |||| || ||||| | |||||||||||||| | ||| | |||||| Sbjct 273 GAAGGCCCATATCGGTGTGGACGCTCAATCGGGTCTGGTGCACACGGTGCGCGGCACGGC 214 Query 9656 GGCCAACGAGCCGGACGTATCGCAGGCCCACGCCCTGCTGCACGGTCATGAGCAGGA-AG 9714 || ||||| || || | ||||| |||| |||||||| ||||| ||| || | | Sbjct 213 GGGCAACGTCAACGATGTGACCGAGGCCAACGCGCTGCTGCATGGTCAGGAG-AGCAGCG 155 Query 9715 CGTTTGGCGATGCGGGCTACACCGGCGTGGACAAGCGC 9752 | | ||| ||||| || || |||| ||||| ||| Sbjct 154 CCTATGGTGATGCTGGGTATCAGGGCGCAGACAAACGC 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119020478256708