Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3915 82.4 9e-11 >seq3915 Length=2367 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 139569 AACGTCAACATCCTGGAAGGAATACGTTTTTATGTTTCTTTTGCTTGCAGTTTTGCTTTT 139628 |||||||| ||||| |||| || || ||||| || ||||| ||| || || ||| Sbjct 492 AACGTCAATATCCTCGAAGCCATCCGCTTTTACGTCAGCTTTGCCTGCTCGTTCGCGTTT 433 Query 139629 GGTGAACTTAAACTCATGGAAGGTTCTGCCAAGATCATCTCCCTTATTGCGAGAGATGAA 139688 | || | || | |||||||| ||||||||||||| ||| |||||| | || ||| Sbjct 432 GCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATCATCCGCCTCATTGCGCGTGACGAA 373 Query 139689 AACCAACACCTCGCCATCACCCAAAACATTCTGAACA-AATGGGCTCAGG 139737 || |||||| || |||||| |||| ||||| | ||| |||| || Sbjct 372 GCCCTGCACCTCACCGGCACCCAGCACATGCTGAATATCATGCGCTCCGG 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610325971081320