Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4549 125 8e-24 >seq4549 Length=1887 Score = 125 bits (138), Expect = 8e-24 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 154866 TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAA-ACTAACATTAGACA 154924 || ||| | ||| ||| || ||||| ||||| ||||| |||||| | | | || | | | Sbjct 24 TCGTGTCTGATGGCTACTTATCCATCAACACACGGTGTTTTTGAAGAATCA-ATCAAAGA 82 Query 154925 GATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAA 154984 || ||| |||| ||||| ||||||| || || || ||| | ||||| || ||| | || Sbjct 83 AATCTGTGAGATTATTCATAACAATGGCGGGCAAGTTTATATGGATGGTGCTAATATGAA 142 Query 154985 TGCACAGGTAGGACTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACT 155043 |||||||||||| || | || | ||| ||||| || ||||| || || || Sbjct 143 TGCACAGGTAGGTTTAACTTCTCC-GGCATCTATCGGTGCTGACGTATGCCACCTTAATC 201 Query 155044 TACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 155098 | |||||||||||||||||||| ||||| ||||| ||||| || | || ||||| Sbjct 202 TGCATAAAACATTCTGTATTCCTCATGGTGGTGGTGGTCCGGGTATGGGACCTAT 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579145589594720