Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4549 149 7e-31 >seq4549 Length=1887 Score = 149 bits (164), Expect = 7e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 159541 TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAG 159600 || ||| | ||| ||| |||||||| ||||| ||||| |||||| | |||| | | Sbjct 24 TCGTGTCTGATGGCTACTTATCCATCAACACACGGTGTTTTTGAAGAATCAATCAAAGAA 83 Query 159601 ATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAAT 159660 || ||| ||||| ||||| | ||||| || || || ||| | |||||||| ||| | ||| Sbjct 84 ATCTGTGAGATTATTCATAACAATGGCGGGCAAGTTTATATGGATGGTGCTAATATGAAT 143 Query 159661 GCACAGGTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTT 159719 |||||||||||| || | || | |||| ||||| || ||||| || || || | Sbjct 144 GCACAGGTAGGTTTAACTTCTCC-GGCATCTATCGGTGCTGACGTATGCCACCTTAATCT 202 Query 159720 ACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 ||||| |||||||||||||| ||||| ||||| ||||| || | || ||||||| Sbjct 203 GCATAAAACATTCTGTATTCCTCATGGTGGTGGTGGTCCGGGTATGGGACCTATTG 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587982964008880