Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq3915 95.1 1e-14 seq3574 82.4 9e-11 >seq3915 Length=2367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 154135 AATGTCTATATACTAGAAGGCATCCGTTTCTACGTATCGTTTGCTTGTTCGTTCGCTTTC 154194 || ||| |||| || |||| |||||| || ||||| ||||| || |||||||| || Sbjct 492 AACGTCAATATCCTCGAAGCCATCCGCTTTTACGTCAGCTTTGCCTGCTCGTTCGCGTTT 433 Query 154195 GGTGAAAACAAACTGATGGAAGGCAATGCTAAGATCATTTCTCTCATTGCGAGAGATGAA 154254 | || ||| |||||||||||||||| |||||||| ||||||||| | || ||| Sbjct 432 GCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATCATCCGCCTCATTGCGCGTGACGAA 373 Query 154255 TCGCAGCACATGACCATCACTCAGAACATTCTAAA 154289 | | |||| | ||| ||| ||| |||| || || Sbjct 372 GCCCTGCACCTCACCGGCACCCAGCACATGCTGAA 338 >seq3574 Length=2782 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 163497 ATTCCTCTATAGCTCAGTTGGTAGAGCACGGAACTGTTAATTCTGTTGTCCCTGGTTCGA 163556 ||||||| |||||||||| |||||||| | | ||||||||| | ||||||||||||| Sbjct 2474 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 2533 Query 163557 GTCCAGGTGGAGGAG 163571 | |||||| |||||| Sbjct 2534 GCCCAGGTTGAGGAG 2548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611625020325400