Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015938.1 Length=89916 Score E Sequences producing significant alignments: (Bits) Value seq6517 87.8 1e-12 >seq6517 Length=1260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 72830 ATTAAGCCTTTGGCAGACTTCTTGGTTCCATCGTCAGTTGCAGGGTCTTTGAAGATTTCA 72889 || ||||||||||| || |||||||| |||||||| || |||||||||| | || || Sbjct 113 ATCAAGCCTTTGGCCGATTTCTTGGTGCCATCGTCTGTAATAGGGTCTTTGTATATCTCT 172 Query 72890 CGAGGTTCACCATCAACGATACCCCAT--GTCGCCTTCATCGCCCAACCCAGAGTGTCAC 72947 | | ||| || | || | | |||| || || ||||| || | || | || |||| Sbjct 173 CTACCTTCGCCGTTTAC--TTCTCCATAAGTGGCTTTCATGGCAAAGCCGAAGGTATCAC 230 Query 72948 GAGTGACATACTGATAGGTGAACGAGCCGATACCCAGCACGACGTTGCTAGAGGCAAAGC 73007 | || || ||||| || | ||||| | || ||||| || ||| |||||||||||| Sbjct 231 GGGTATTGTATTGATAAGTATATGAGCCAACGCCTAGCACAACATTGGTAGAGGCAAAGC 290 Query 73008 CCTT 73011 | || Sbjct 291 CTTT 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 287573861200551