Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5172 111 2e-19 >seq5172 Length=1594 Score = 111 bits (122), Expect = 2e-19 Identities = 303/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || ||| ||||||||| || | || | ||||||||||||||| ||||| || | |||| Sbjct 953 ACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAAT 1012 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || || ||||||||| ||||| ||||||| | | ||| ||||| || | | Sbjct 1013 GAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAGT 1072 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCAT 18839 | ||| || | || || ||||| | || || ||| ||||||| ||| ||||| Sbjct 1073 GTCAGTAGCAGGCGGTCAGCAACAAACTCGATGTACTGT-TTCATCAGGTCAGCGTTCAT 1131 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || || | ||||| | ||||| || | |||||| ||||| || || || || Sbjct 1132 ACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTC 1191 Query 18900 TGATATAATAGATACAACTCTATC-TTCA-TTAGGAGGGTA--TAGAAGATGTTTAAACA 18955 | ||| || || | | |||| |||| || || ||| || | ||| Sbjct 1192 GGCAATA----ATCTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTACA 1247 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 ||| || || || ||| ||| | || || || | | |||| |||||| ||||| Sbjct 1248 GCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAAC 1307 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAA 19074 | || || |||||||| || | ||||| | |||||| || | |||| | | | |||||| Sbjct 1308 TCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAAT-GGAGCAGAAGCTACCAGAA 1366 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAG 19109 ||||| || ||||| | || ||||| || || || Sbjct 1367 AAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAG 1401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562043574300120