Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1470 122 7e-22 seq314 89.7 4e-12 >seq1470 Length=11388 Score = 122 bits (134), Expect = 7e-22 Identities = 360/545 (66%), Gaps = 9/545 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||||| || || || || || || || || ||||| || | || || Sbjct 10179 GGCATCGATTTGGGCACGACGTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTGGAG 10120 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||| || || ||||| ||| | || || ||||| ||||| | || ||||| | Sbjct 10119 ATTATTGCGAACGACCAAGGAAACCGCACGACGCCATCGTATGTGGCGTTTACGGAGTCA 10060 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | | ||||||||||||| || | |||| || || | ||| || | Sbjct 10059 GAGCGTCTGATTGGTGATGCAGCGAAGAACCAAGTTGCTATGAACGCACACAACACGGTG 10000 Query 550178 TTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236 || ||||| || ||||| || ||| | ||||||| |||| | || ||| | || || Sbjct 9999 TTCGATGCCAAGCGTTTGATCGGACGCAAGTTTTC-TGATCCAGAAGTGCAGTCGGACAT 9941 Query 550237 GAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GA-AAACCTTATATTGAAGCTAC 550293 || |||||||| ||| | | | | ||| | || |||||| | | |||| | | Sbjct 9940 TAAACATTGGCCGTTCAAGGTGACTCGAGATTCGGCGGACAAACCTCAGGTGGAAG-TGC 9882 Query 550294 TCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | || | | | || | || || || || | || || || ||||| | || | Sbjct 9881 AGTTTAAAGGTGAGACCAAAAGGTTCCAGCCTGAGGAGATCTCGTCCATGGTGCTGATCA 9822 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATAACT 550411 | ||| | | || |||| | |||| |||| |||| | | ||||||| | || Sbjct 9821 AGATGCGTGAGATTGCGGAAGCTTATATTGG-CAAGCAAGTGAGGAATGCAGTGGTGACG 9763 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || ||||| || || ||||| |||||||| || || |||||||||||| |||||| Sbjct 9762 GTCCCTGCATACTTCAACGACTCGCAACGTCAGGCGACCAAAGATGCTGGAGCCATTGCT 9703 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || | || || || ||||||||||| || || || ||||| || | || || || || Sbjct 9702 GGTTTGAACGTGCTGCGTATTATCAACGAGCCAACGGCTGCCGCGATCGCCTACGGCCTG 9643 Query 550532 GATAA 550536 || || Sbjct 9642 GACAA 9638 >seq314 Length=49253 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || |||||||||||||| || ||||| || || ||||| || || ||| Sbjct 20327 ACGGTCCCGGCCTATTTTAATGACTCGCAGCGTCAGGCGACGAAAGACGCCGGCAAAATT 20386 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||||| | || || |||||||| |||||||| || || |||||| | || || || Sbjct 20387 GCTGGACTGGACGTGCTCCGTATTATTAATGAACCCACGGCCGCTGCATTGGCGTACGG 20445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028805073093670