Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_016163.1
Length=262391
Score E
Sequences producing significant alignments: (Bits) Value
seq6517 89.7 9e-13
>seq6517
Length=1260
Score = 89.7 bits (98), Expect = 9e-13
Identities = 164/235 (70%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 29528 AAAAGGTTCTATTCAGGTATTATGGGATATCTTTGGTGGTTCAATCAACACTAAAGGTTT 29587
|||||| |||| || | |||||||||| ||| |||||| | ||| | ||||| |
Sbjct 442 AAAAGGGGTTATTGAGTTGTTATGGGATACCTTCGGTGGTATCACCAATGCAAAAGGCTA 383
Query 29588 CAAAG---TACTGAATGACCATATTGGTCTGATTTATGGTGATTCAATCACTATTCCTCG 29644
|||| |||| | || ||| || | |||||||| ||| |||| ||| | |
Sbjct 382 TAAAGAATTACT-ACCCACAATAGGGGCC--ATTTATGGCGATAGCATCAATATAGCAAG 326
Query 29645 TGCTGTACAAATCTTTACTCGTCTTAAAG-AGAAAGGTTTTGCATCTTCTAACGTAGTAT 29703
||| |||||||| | || |||||| | ||||| ||||| ||| | || || ||
Sbjct 325 AGCTACACAAATCTGTGAACGA-TTAAAGCAAAAAGGCTTTGCCTCTACCAATGTTGTGC 267
Query 29704 TGGGTATTGGTTCCTTTACCTATCAGATGAATACCCGTGATACCTTCGGATTTGC 29758
| || |||| || | ||| ||||| |||||||||||||||||||| |||||
Sbjct 266 TAGGCGTTGGCTCATATACTTATCAATACAATACCCGTGATACCTTCGGCTTTGC 212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 839425783826680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |