Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_016163.1 Length=262391 Score E Sequences producing significant alignments: (Bits) Value seq6517 89.7 9e-13 >seq6517 Length=1260 Score = 89.7 bits (98), Expect = 9e-13 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 29528 AAAAGGTTCTATTCAGGTATTATGGGATATCTTTGGTGGTTCAATCAACACTAAAGGTTT 29587 |||||| |||| || | |||||||||| ||| |||||| | ||| | ||||| | Sbjct 442 AAAAGGGGTTATTGAGTTGTTATGGGATACCTTCGGTGGTATCACCAATGCAAAAGGCTA 383 Query 29588 CAAAG---TACTGAATGACCATATTGGTCTGATTTATGGTGATTCAATCACTATTCCTCG 29644 |||| |||| | || ||| || | |||||||| ||| |||| ||| | | Sbjct 382 TAAAGAATTACT-ACCCACAATAGGGGCC--ATTTATGGCGATAGCATCAATATAGCAAG 326 Query 29645 TGCTGTACAAATCTTTACTCGTCTTAAAG-AGAAAGGTTTTGCATCTTCTAACGTAGTAT 29703 ||| |||||||| | || |||||| | ||||| ||||| ||| | || || || Sbjct 325 AGCTACACAAATCTGTGAACGA-TTAAAGCAAAAAGGCTTTGCCTCTACCAATGTTGTGC 267 Query 29704 TGGGTATTGGTTCCTTTACCTATCAGATGAATACCCGTGATACCTTCGGATTTGC 29758 | || |||| || | ||| ||||| |||||||||||||||||||| ||||| Sbjct 266 TAGGCGTTGGCTCATATACTTATCAATACAATACCCGTGATACCTTCGGCTTTGC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 839425783826680