Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq3915 412 6e-110 >seq3915 Length=2367 Score = 412 bits (456), Expect = 6e-110 Identities = 749/1080 (69%), Gaps = 31/1080 (3%) Strand=Plus/Plus Query 207867 ATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTGTCA 207926 |||||||| | ||||||||| | ||| || || || || || || || ||| | || Sbjct 2 ATCTGACCAATCAGGTAAGAGCTGAGTTCGACCTCTTGCGGCGCCACTTGTACGGTATCG 61 Query 207927 GTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTG---AATGGAAGA 207983 | ||||||| | ||| ||||||||||| ||||| |||| ||| |||| | Sbjct 62 GAGGCCAGCCAGGTGTTGATCCATGGAATCGGGTTGTTTTTGGCATTGGGGAATGCCGGT 121 Query 207984 TCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATC 208043 ||| |||| || ||||||| ||||||| ||||| || || |||||||| ||||| Sbjct 122 GGCAAGCCGACCGAGGCCATACGGGTGTTGGTGATGTATTCCACGTACTGGCACAGGATA 181 Query 208044 TCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCT 208103 || ||||||| || ||||| || |||||||| ||||| || || ||||| | ||| || Sbjct 182 TCCTTGTTCAAGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCCATTTTTTCTCC 241 Query 208104 TGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCA 208163 |||| |||| |||||| || | |||| | ||| || || ||||| Sbjct 242 TGCTCGGCGGCGCTTTTGAACATCTCAAAGCACTCAGTGTGCAGCTCAGCGGCGATCTCG 301 Query 208164 GCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACC 208223 || | ||| | ||| || | || ||| ||| | || | |||||||| || || Sbjct 302 GCGAACTCGGCATCGTCCTGGCCGGAGCGCATGATATTCAGCATGTGCTGGGTGCCGGTG 361 Query 208224 ATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGC 208283 | ||| || ||||||||||| || || | ||||||||| || || |||||||||| | Sbjct 362 AGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATGATCTTGGCATTGCCTTCCATCACC 421 Query 208284 TTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGT 208343 || || |||||||| ||||| ||||| || ||| ||||| || || || ||||| || Sbjct 422 TTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTGACGTAAAAGCGGATGGCTTCGAGG 481 Query 208344 GAGTTGA--TAGATTGCAG--AGCCAGGTACAGT-GCTTTCTTAATAGCACGAAGATTAA 208398 |||| | || ||| ||| |||| || ||||| || | ||||| || | Sbjct 482 ATATTGACGTTCAT--CAGGCAGC--GGTAGAGCAGCTTT-TTCAGCGCACGCTTGTTGA 536 Query 208399 CATTAACCTT---CTCGCCATTGACTACGTGGTCACCCAGACCCAGGT---AATAGTAC- 208451 | || || ||||||||||| || || | ||| |||||| | |||| || Sbjct 537 CC---ACTTTGGTCTCGCCATTGATGACATGATTGCCCTCACCCAGTTGCGAATACAACA 593 Query 208452 TGGT-TGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTT 208510 |||| || | || ||||| | ||||| ||||||| | | || ||||| | Sbjct 594 TGGTCTGCT---GG--ATCAGCTCATCGTAATAATGGGCGATATCTGTCGCACGCGCGGT 648 Query 208511 GATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCT 208570 ||| | ||| || || | ||||||||| | | ||||| || || ||||| || | Sbjct 649 GATGTTTTCATTGCGCACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCG 708 Query 208571 GATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCA 208630 ||||||||| || || || ||| ||||| || || || |||||||||| ||| Sbjct 709 GATGATGTGGGTGTATGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCA 768 Query 208631 TGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTG 208690 ||||||||||| || | || | ||| | || || ||||| || | ||||||||| Sbjct 769 GGTTTCCAGCTCGGGCAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTG 828 Query 208691 GATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATC 208750 ||| || ||||| || |||||||| |||||||| |||||||| | || || || || || Sbjct 829 GATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTC 888 Query 208751 TGGTAAAGCCATG-TAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGA 208809 || | ||| || |||||| ||||| | || ||||| |||||||| |||||||||| Sbjct 889 -GGGCAGGCCTTGATAGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGA 947 Query 208810 AGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAAC 208869 |||| || ||||||||||| || || ||||| || | | ||| ||||||||||| || | Sbjct 948 AGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACC 1007 Query 208870 GAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTT 208929 | | || |||||| || || | ||||||| |||||| | ||| ||||| | | ||| Sbjct 1008 GCGCCACATTGACGGGCTGGCCGAAGAACATGGGTTCTTTGAGTTGGTCGTTGTCGGTTT 1067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910988678883560