Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 412 6e-110
>seq3915
Length=2367
Score = 412 bits (456), Expect = 6e-110
Identities = 749/1080 (69%), Gaps = 31/1080 (3%)
Strand=Plus/Plus
Query 207867 ATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTGTCA 207926
|||||||| | ||||||||| | ||| || || || || || || || ||| | ||
Sbjct 2 ATCTGACCAATCAGGTAAGAGCTGAGTTCGACCTCTTGCGGCGCCACTTGTACGGTATCG 61
Query 207927 GTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTG---AATGGAAGA 207983
| ||||||| | ||| ||||||||||| ||||| |||| ||| |||| |
Sbjct 62 GAGGCCAGCCAGGTGTTGATCCATGGAATCGGGTTGTTTTTGGCATTGGGGAATGCCGGT 121
Query 207984 TCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATC 208043
||| |||| || ||||||| ||||||| ||||| || || |||||||| |||||
Sbjct 122 GGCAAGCCGACCGAGGCCATACGGGTGTTGGTGATGTATTCCACGTACTGGCACAGGATA 181
Query 208044 TCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCT 208103
|| ||||||| || ||||| || |||||||| ||||| || || ||||| | ||| ||
Sbjct 182 TCCTTGTTCAAGCCTATCATGGAGCCATCTTTAAACAGGTATTCTGCCCATTTTTTCTCC 241
Query 208104 TGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCA 208163
|||| |||| |||||| || | |||| | ||| || || |||||
Sbjct 242 TGCTCGGCGGCGCTTTTGAACATCTCAAAGCACTCAGTGTGCAGCTCAGCGGCGATCTCG 301
Query 208164 GCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACC 208223
|| | ||| | ||| || | || ||| ||| | || | |||||||| || ||
Sbjct 302 GCGAACTCGGCATCGTCCTGGCCGGAGCGCATGATATTCAGCATGTGCTGGGTGCCGGTG 361
Query 208224 ATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGC 208283
| ||| || ||||||||||| || || | ||||||||| || || |||||||||| |
Sbjct 362 AGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATGATCTTGGCATTGCCTTCCATCACC 421
Query 208284 TTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGT 208343
|| || |||||||| ||||| ||||| || ||| ||||| || || || ||||| ||
Sbjct 422 TTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTGACGTAAAAGCGGATGGCTTCGAGG 481
Query 208344 GAGTTGA--TAGATTGCAG--AGCCAGGTACAGT-GCTTTCTTAATAGCACGAAGATTAA 208398
|||| | || ||| ||| |||| || ||||| || | ||||| || |
Sbjct 482 ATATTGACGTTCAT--CAGGCAGC--GGTAGAGCAGCTTT-TTCAGCGCACGCTTGTTGA 536
Query 208399 CATTAACCTT---CTCGCCATTGACTACGTGGTCACCCAGACCCAGGT---AATAGTAC- 208451
| || || ||||||||||| || || | ||| |||||| | |||| ||
Sbjct 537 CC---ACTTTGGTCTCGCCATTGATGACATGATTGCCCTCACCCAGTTGCGAATACAACA 593
Query 208452 TGGT-TGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTT 208510
|||| || | || ||||| | ||||| ||||||| | | || ||||| |
Sbjct 594 TGGTCTGCT---GG--ATCAGCTCATCGTAATAATGGGCGATATCTGTCGCACGCGCGGT 648
Query 208511 GATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCT 208570
||| | ||| || || | ||||||||| | | ||||| || || ||||| || |
Sbjct 649 GATGTTTTCATTGCGCACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCG 708
Query 208571 GATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCA 208630
||||||||| || || || ||| ||||| || || || |||||||||| |||
Sbjct 709 GATGATGTGGGTGTATGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCA 768
Query 208631 TGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTG 208690
||||||||||| || | || | ||| | || || ||||| || | |||||||||
Sbjct 769 GGTTTCCAGCTCGGGCAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTG 828
Query 208691 GATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATC 208750
||| || ||||| || |||||||| |||||||| |||||||| | || || || || ||
Sbjct 829 GATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTC 888
Query 208751 TGGTAAAGCCATG-TAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGA 208809
|| | ||| || |||||| ||||| | || ||||| |||||||| ||||||||||
Sbjct 889 -GGGCAGGCCTTGATAGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGA 947
Query 208810 AGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAAC 208869
|||| || ||||||||||| || || ||||| || | | ||| ||||||||||| || |
Sbjct 948 AGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACC 1007
Query 208870 GAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTT 208929
| | || |||||| || || | ||||||| |||||| | ||| ||||| | | |||
Sbjct 1008 GCGCCACATTGACGGGCTGGCCGAAGAACATGGGTTCTTTGAGTTGGTCGTTGTCGGTTT 1067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 910988678883560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |