Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq478 192 5e-44
>seq478
Length=29740
Score = 192 bits (212), Expect = 5e-44
Identities = 450/664 (68%), Gaps = 25/664 (4%)
Strand=Plus/Minus
Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862
|||||||||||||| | ||| || || || ||||| || | | || | |||||| ||
Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571
Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922
|||| | || | || || |||| | | ||| || || | |||||||||||| ||
Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511
Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982
|| || || |||||||||||||| | || | |||||| | ||| ||||| | ||| |||
Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451
Query 29983 TC-GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30041
|| ||| |||||||||||||| | |||||||||| || || |||||| | ||
Sbjct 15450 TCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATC 15392
Query 30042 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAG 30098
|| |||||||| ||| | ||| || | || ||||| ||| || || |
Sbjct 15391 AGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTG 15332
Query 30099 GTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30157
||| | || ||||| ||||| || || | ||||| || |||||| |
Sbjct 15331 TATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGG 15276
Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217
|||||| ||| |||||||| | ||||||||| || || || ||||| |||||||| | |
Sbjct 15275 TGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCT 15216
Query 30218 CCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276
||| ||| || ||||| || |||||| | || | || || ||| ||||||||||
Sbjct 15215 CCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATA 15157
Query 30277 TTTACCCCCTTCTCGGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCA 30334
|| || || | ||| | | || | | ||| ||||| | | |||||||||||
Sbjct 15156 CGGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCA 15099
Query 30335 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30390
||||||| | || | ||| || || | ||| ||||| || | |||||| |||
Sbjct 15098 GCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAACGCGTTGT 15039
Query 30391 CCCTTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCC 30448
||| | || || || ||| | |||||||| ||||| |||||||| || |
Sbjct 15038 TCCTCAA---ACTAAATCGCATCTGCGCTCCAAACACTGACAACGTCCCCGTGCCGGTTC 14982
Query 30449 TGTC 30452
|||
Sbjct 14981 GGTC 14978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408571370409359
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |