Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq478 192 5e-44 >seq478 Length=29740 Score = 192 bits (212), Expect = 5e-44 Identities = 450/664 (68%), Gaps = 25/664 (4%) Strand=Plus/Minus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 |||||||||||||| | ||| || || || ||||| || | | || | |||||| || Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| | || | || || |||| | | ||| || || | |||||||||||| || Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || |||||||||||||| | || | |||||| | ||| ||||| | ||| ||| Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451 Query 29983 TC-GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30041 || ||| |||||||||||||| | |||||||||| || || |||||| | || Sbjct 15450 TCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATC 15392 Query 30042 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAG 30098 || |||||||| ||| | ||| || | || ||||| ||| || || | Sbjct 15391 AGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTG 15332 Query 30099 GTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30157 ||| | || ||||| ||||| || || | ||||| || |||||| | Sbjct 15331 TATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGG 15276 Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||||| ||| |||||||| | ||||||||| || || || ||||| |||||||| | | Sbjct 15275 TGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCT 15216 Query 30218 CCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 ||| ||| || ||||| || |||||| | || | || || ||| |||||||||| Sbjct 15215 CCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATA 15157 Query 30277 TTTACCCCCTTCTCGGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCA 30334 || || || | ||| | | || | | ||| ||||| | | ||||||||||| Sbjct 15156 CGGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCA 15099 Query 30335 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30390 ||||||| | || | ||| || || | ||| ||||| || | |||||| ||| Sbjct 15098 GCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAACGCGTTGT 15039 Query 30391 CCCTTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCC 30448 ||| | || || || ||| | |||||||| ||||| |||||||| || | Sbjct 15038 TCCTCAA---ACTAAATCGCATCTGCGCTCCAAACACTGACAACGTCCCCGTGCCGGTTC 14982 Query 30449 TGTC 30452 ||| Sbjct 14981 GGTC 14978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408571370409359