Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_017972.1
Length=280538
Score E
Sequences producing significant alignments: (Bits) Value
seq1684 132 9e-26
>seq1684
Length=9696
Score = 132 bits (146), Expect = 9e-26
Identities = 259/377 (69%), Gaps = 12/377 (3%)
Strand=Plus/Plus
Query 22978 TCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGG 23037
||||| |||||||||||||| | ||| ||||| |||||||| || || ||| || ||
Sbjct 2499 TCATCTGATTCAAAGAACAGGACTTGGGCGCAGCCTTCGCCTGCATAAATCTTGGCGGGT 2558
Query 23038 CTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGC 23097
|| || || || ||||| || || | | |||| |||||| ||||| | |||
Sbjct 2559 AGAGGAGTCGTGTTACTGAACTCAAGTGTGACATAACCTTCCCATTCCGGTTCAAACGGT 2618
Query 23098 GTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAAT 23157
|||||||| || |||||||||||||| ||||| || || ||||| ||||| | |||
Sbjct 2619 GTGACGTTCACAATGATGCCGCAACGTGCATATGTTGACTTGCCCAGGCATACCGTTAAC 2678
Query 23158 ACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGA 23217
||| || ||||| ||| | ||| ||| |||||||| || ||| || ||
Sbjct 2679 ACGGAGCGTGGAATACGGAAATATTCTACTGTGCGCGCCAGTGCAAACGAGTTGGGGGG- 2737
Query 23218 ATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCG--TAACGAAATTGTCTTCGGTGAAAT 23275
||||| | | || |||| | ||||| |||| |||| ||| |||
Sbjct 2738 --GATCACACAAT-ACCCTTTGCCAGACACTTCGACAAACG--ATTG---CGGGTCAAAC 2789
Query 23276 TCTTT-GGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAA 23334
| ||| || ||||||| | | |||| | ||| ||||| || |||||||| | | ||
Sbjct 2790 TGTTTGGGGTCGACAATGGTGCTATTGATGTTAGTGAACACGCGGAATTCGTCAGCACAG 2849
Query 23335 CGAATATCGTAGCCGTA 23351
|| |||||||| |||||
Sbjct 2850 CGGATATCGTAACCGTA 2866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897489445482640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |