Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq1684 132 9e-26 >seq1684 Length=9696 Score = 132 bits (146), Expect = 9e-26 Identities = 259/377 (69%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 22978 TCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGG 23037 ||||| |||||||||||||| | ||| ||||| |||||||| || || ||| || || Sbjct 2499 TCATCTGATTCAAAGAACAGGACTTGGGCGCAGCCTTCGCCTGCATAAATCTTGGCGGGT 2558 Query 23038 CTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGC 23097 || || || || ||||| || || | | |||| |||||| ||||| | ||| Sbjct 2559 AGAGGAGTCGTGTTACTGAACTCAAGTGTGACATAACCTTCCCATTCCGGTTCAAACGGT 2618 Query 23098 GTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAAT 23157 |||||||| || |||||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 2619 GTGACGTTCACAATGATGCCGCAACGTGCATATGTTGACTTGCCCAGGCATACCGTTAAC 2678 Query 23158 ACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGA 23217 ||| || ||||| ||| | ||| ||| |||||||| || ||| || || Sbjct 2679 ACGGAGCGTGGAATACGGAAATATTCTACTGTGCGCGCCAGTGCAAACGAGTTGGGGGG- 2737 Query 23218 ATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCG--TAACGAAATTGTCTTCGGTGAAAT 23275 ||||| | | || |||| | ||||| |||| |||| ||| ||| Sbjct 2738 --GATCACACAAT-ACCCTTTGCCAGACACTTCGACAAACG--ATTG---CGGGTCAAAC 2789 Query 23276 TCTTT-GGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAA 23334 | ||| || ||||||| | | |||| | ||| ||||| || |||||||| | | || Sbjct 2790 TGTTTGGGGTCGACAATGGTGCTATTGATGTTAGTGAACACGCGGAATTCGTCAGCACAG 2849 Query 23335 CGAATATCGTAGCCGTA 23351 || |||||||| ||||| Sbjct 2850 CGGATATCGTAACCGTA 2866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897489445482640