Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq3915 217 1e-51 seq2003 134 1e-26 seq5988 100 3e-16 >seq3915 Length=2367 Score = 217 bits (240), Expect = 1e-51 Identities = 277/379 (73%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 118114 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118173 || |||||| ||||| | || || || || | ||| || |||||||| |||||||| Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723 Query 118174 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGT 118233 |||||| ||||| || ||||| |||||||| ||||||| ||| |||||||| | Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783 Query 118234 GTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAG 118293 ||||| | ||| | || | | || || | ||||||||| | |||||||| || Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843 Query 118294 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-T 118352 |||| |||||||||||||||||||| || ||||| || || || ||||| | || | Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAGGC-CTTGAT 902 Query 118353 AGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCT 118412 |||| ||||| | | ||| | |||||||| |||||||||||||| | ||||| | Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962 Query 118413 TCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTG 118472 |||||||||||||||||||| | | |||||| |||||||| || | || || | Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022 Query 118473 TCTCGCCGAGGAACATCGG 118491 || ||||| |||||| || Sbjct 1023 GCTGGCCGAAGAACATGGG 1041 Score = 138 bits (152), Expect = 1e-27 Identities = 315/470 (67%), Gaps = 13/470 (3%) Strand=Plus/Plus Query 119157 CACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCA 119216 |||| |||||||| | ||| || |||| ||| | |||||||||||| ||||| |||||| Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946 Query 119217 TCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATCGCGATATCGACACGCAGCTTTT 119276 ||| || || ||| ||||||||||||| ||||| || || ||| | ||||| ||| Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006 Query 119277 CCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATCCACCTCTTTTTTGTAACGGTCGA 119336 ||||||| | | || | | | || || || || | ||||||||||| | || | Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066 Query 119337 TCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTT 119396 |||||| |||||| | | ||| || || |||| || | ||||| ||| | ||| Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126 Query 119397 TTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAA 119456 | | | || || |||| || ||||||||||| | || ||| || ||| Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTGAATCGCCTCA--AAG---GTGCG 2181 Query 119457 CAGCGTTAGCTGCA-CGAGG----GTCGCTGTACTTCATCCCGCGCTTCGCCAGGTAGTA 119511 | || || || || || ||| |||| | | ||| |||||||||||||| Sbjct 2182 GTGGGTCAGTCCCAGCGCGGCTTCATCGGTGTAGCTGGTGCCGTTTTTCGCCAGGTAGTA 2241 Query 119512 CGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAGCT---TGGTCTTCTCTGCCGC 119568 ||| |||| || ||| | ||||||| |||||| | ||| || ||| || Sbjct 2242 AGCGTAGTTGATCACGCCCACGCCCAGTGAACGGCGTTTGTTAGTGGCGTTGAGTGCTGC 2301 Query 119569 CAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAGAGCACGAACCA 119618 |||||||| | ||| || |||| ||| ||||| ||||| |||| Sbjct 2302 TTTGACCGGGTAATCCTGGTATTCCAACAGAGCATCCAGTGCACGCACCA 2351 >seq2003 Length=7520 Score = 134 bits (148), Expect = 1e-26 Identities = 525/812 (65%), Gaps = 39/812 (5%) Strand=Plus/Minus Query 119663 CCAAGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTA 119722 || ||||||| ||| |||| |||||||| || | ||||| ||| | ||||| Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCC------TTCGGTGTCGTTG 7420 Query 119723 ATGTCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACC 119782 ||||| || | || | || ||||||||||| |||||||||||||||||||| |||| Sbjct 7419 ATGTCATTCAATGGCTTGGTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCACC 7360 Query 119783 GGGGCCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAA 119842 || ||| ||| ||||||||||||| || || ||||||||||||| ||| | || Sbjct 7359 GGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTAG 7300 Query 119843 ATACGACCAGTTTGTGAACGCTCCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATA 119902 ||||| || || | |||||||||| | | ||||| ||| |||| || || Sbjct 7299 ATACGGCCGGTACCGGCACGCTCCTGCATGACCAGCGAGAACAAGTCTACCGCTGGAAT- 7241 Query 119903 GACTTC-TTCGC-CACGGAAGGATCTGCTTCCAGTTCCTCGTAAAGCTGTTGGAATTTCT 119960 || | || || | | || |||||| || ||| || | | || | | Sbjct 7240 -GCTGCGTTTGCGTATGCTTTCATTTGCTTCGTACTCGGTGTACAGGCGCTCAAACTCGT 7182 Query 119961 CCTGATCAGAGAAGAAATATTCGTACAGCTTACCGCCAGCCA---CGTTCGGATGGAACA 120017 |||| || | ||||| ||||||| ||||| | | | ||| |||| Sbjct 7181 CCTGGTCGGCAAAGAAGGCATCGTACA------AGCCAGGGATATCATGCGGTGAAAACA 7128 Query 120018 ACGTGATGTTCTTGCCCTGCTGGAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGT 120077 |||||||||| ||||| ||||| || | ||| ||||||||| | ||| | Sbjct 7127 GAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACGCCAT 7068 Query 120078 AGTCCACATGGCGAGCACGAGTGCTC-TCGGTGCCACGGTTGTTCTTCAGAACGATCAGG 120136 | || | ||| || |||| || || || ||| |||||||| ||||| || | ||| Sbjct 7067 AATCGAGATGACGCACACG-GTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCAGT 7009 Query 120137 CTCTCAAAATCCCAGTGCCACATCGGGTAGAAATAGTTAGCCGATGCCTTACGGACGCCG 120196 || | || |||||||| ||||||||| | | |||| | || || ||| Sbjct 7008 GATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACCG 6949 Query 120197 CCCTGAGAG-----GTCCACCCAAGAGACTCTTGGTACA-TGCGGACAATCGGCACGGTG 120250 ||||| ||| | |||| ||| ||| ||| | | | || ||||| | Sbjct 6948 CCCTGCGAGCAGGATTTCACCGCAGA-----CTGGAACAGTTTGTAGAA-CGGCAGGCAA 6895 Query 120251 CCTGCGTGTTTAACCTCACCACCACGAATGGCAGAATCCTGACCACGAATCATGCCGAAG 120310 || | |||| | || || ||||| || | || | | || || ||| | Sbjct 6894 CCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGCG 6835 Query 120311 TTCAGGCCGATCCCGGCTCGTTGAGCCGCATA-TTTACCCT-GCGC-CGTGTTGGCGTTA 120367 || | ||| || ||||| ||||| | |||| || || | |||| ||| | || || Sbjct 6834 TTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCATT- 6776 Query 120368 AAGATCTGGTCGATATTATCACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTC 120427 ||| ||| | | ||| || |||| ||||||||||| ||||| ||||| || || Sbjct 6775 --GATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTA 6718 Query 120428 GGGGTACGAACACCCGCCATGATCGGGGTCGG 120459 || ||||| ||||| |||||||| || || || Sbjct 6717 GGAGTACGCACACCGGCCATGATAGGCGTAGG 6686 >seq5988 Length=1363 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 146803 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAG 146862 ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1272 CGGGGTATAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGAAGGTTCGAA 1331 Query 146863 TCCAGCTACACCGACCAA 146880 ||| ||||||||||| Sbjct 1332 TCCTTTCACACCGACCAA 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477490186802440