Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_017974.1
Length=149273
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 217 1e-51
seq2003 134 1e-26
seq5988 100 3e-16
>seq3915
Length=2367
Score = 217 bits (240), Expect = 1e-51
Identities = 277/379 (73%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 118114 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118173
|| |||||| ||||| | || || || || | ||| || |||||||| ||||||||
Sbjct 664 CACGATGTCATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTA 723
Query 118174 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGT 118233
|||||| ||||| || ||||| |||||||| ||||||| ||| |||||||| |
Sbjct 724 TGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGG 783
Query 118234 GTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAG 118293
||||| | ||| | || | | || || | ||||||||| | |||||||| ||
Sbjct 784 CAATGACACCAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 843
Query 118294 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-T 118352
|||| |||||||||||||||||||| || ||||| || || || ||||| | || |
Sbjct 844 CGTCTGATACTTCAGGTTGCTGATGAAAATATGCTTTTCATGCTCGGGCAGGC-CTTGAT 902
Query 118353 AGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCT 118412
|||| ||||| | | ||| | |||||||| |||||||||||||| | ||||| |
Sbjct 903 AGTCAGCGCGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTT 962
Query 118413 TCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTG 118472
|||||||||||||||||||| | | |||||| |||||||| || | || || |
Sbjct 963 TCTCGATCAGCTTCTCGAACACCGGATATTTCTGTTGGTCATACCGCGCCACATTGACGG 1022
Query 118473 TCTCGCCGAGGAACATCGG 118491
|| ||||| |||||| ||
Sbjct 1023 GCTGGCCGAAGAACATGGG 1041
Score = 138 bits (152), Expect = 1e-27
Identities = 315/470 (67%), Gaps = 13/470 (3%)
Strand=Plus/Plus
Query 119157 CACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCA 119216
|||| |||||||| | ||| || |||| ||| | |||||||||||| ||||| ||||||
Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946
Query 119217 TCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATCGCGATATCGACACGCAGCTTTT 119276
||| || || ||| ||||||||||||| ||||| || || ||| | ||||| |||
Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006
Query 119277 CCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATCCACCTCTTTTTTGTAACGGTCGA 119336
||||||| | | || | | | || || || || | ||||||||||| | || |
Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066
Query 119337 TCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTT 119396
|||||| |||||| | | ||| || || |||| || | ||||| ||| | |||
Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126
Query 119397 TTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAA 119456
| | | || || |||| || ||||||||||| | || ||| || |||
Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTGAATCGCCTCA--AAG---GTGCG 2181
Query 119457 CAGCGTTAGCTGCA-CGAGG----GTCGCTGTACTTCATCCCGCGCTTCGCCAGGTAGTA 119511
| || || || || || ||| |||| | | ||| ||||||||||||||
Sbjct 2182 GTGGGTCAGTCCCAGCGCGGCTTCATCGGTGTAGCTGGTGCCGTTTTTCGCCAGGTAGTA 2241
Query 119512 CGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAGCT---TGGTCTTCTCTGCCGC 119568
||| |||| || ||| | ||||||| |||||| | ||| || ||| ||
Sbjct 2242 AGCGTAGTTGATCACGCCCACGCCCAGTGAACGGCGTTTGTTAGTGGCGTTGAGTGCTGC 2301
Query 119569 CAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAGAGCACGAACCA 119618
|||||||| | ||| || |||| ||| ||||| ||||| ||||
Sbjct 2302 TTTGACCGGGTAATCCTGGTATTCCAACAGAGCATCCAGTGCACGCACCA 2351
>seq2003
Length=7520
Score = 134 bits (148), Expect = 1e-26
Identities = 525/812 (65%), Gaps = 39/812 (5%)
Strand=Plus/Minus
Query 119663 CCAAGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTA 119722
|| ||||||| ||| |||| |||||||| || | ||||| ||| | |||||
Sbjct 7473 CCCAGGTTAAAGGCCGACAAGGTACACAGCGCGATTTCGCC------TTCGGTGTCGTTG 7420
Query 119723 ATGTCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACC 119782
||||| || | || | || ||||||||||| |||||||||||||||||||| ||||
Sbjct 7419 ATGTCATTCAATGGCTTGGTTGGCAGCGCGATTTCCATACACAGGTTGGACTGACGCACC 7360
Query 119783 GGGGCCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAA 119842
|| ||| ||| ||||||||||||| || || ||||||||||||| ||| | ||
Sbjct 7359 GGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCAGTGGTCAACGTTCTGGATGTAG 7300
Query 119843 ATACGACCAGTTTGTGAACGCTCCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATA 119902
||||| || || | |||||||||| | | ||||| ||| |||| || ||
Sbjct 7299 ATACGGCCGGTACCGGCACGCTCCTGCATGACCAGCGAGAACAAGTCTACCGCTGGAAT- 7241
Query 119903 GACTTC-TTCGC-CACGGAAGGATCTGCTTCCAGTTCCTCGTAAAGCTGTTGGAATTTCT 119960
|| | || || | | || |||||| || ||| || | | || | |
Sbjct 7240 -GCTGCGTTTGCGTATGCTTTCATTTGCTTCGTACTCGGTGTACAGGCGCTCAAACTCGT 7182
Query 119961 CCTGATCAGAGAAGAAATATTCGTACAGCTTACCGCCAGCCA---CGTTCGGATGGAACA 120017
|||| || | ||||| ||||||| ||||| | | | ||| ||||
Sbjct 7181 CCTGGTCGGCAAAGAAGGCATCGTACA------AGCCAGGGATATCATGCGGTGAAAACA 7128
Query 120018 ACGTGATGTTCTTGCCCTGCTGGAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGT 120077
|||||||||| ||||| ||||| || | ||| ||||||||| | ||| |
Sbjct 7127 GAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACGCCAT 7068
Query 120078 AGTCCACATGGCGAGCACGAGTGCTC-TCGGTGCCACGGTTGTTCTTCAGAACGATCAGG 120136
| || | ||| || |||| || || || ||| |||||||| ||||| || | |||
Sbjct 7067 AATCGAGATGACGCACACG-GTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCAGT 7009
Query 120137 CTCTCAAAATCCCAGTGCCACATCGGGTAGAAATAGTTAGCCGATGCCTTACGGACGCCG 120196
|| | || |||||||| ||||||||| | | |||| | || || |||
Sbjct 7008 GATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACCG 6949
Query 120197 CCCTGAGAG-----GTCCACCCAAGAGACTCTTGGTACA-TGCGGACAATCGGCACGGTG 120250
||||| ||| | |||| ||| ||| ||| | | | || ||||| |
Sbjct 6948 CCCTGCGAGCAGGATTTCACCGCAGA-----CTGGAACAGTTTGTAGAA-CGGCAGGCAA 6895
Query 120251 CCTGCGTGTTTAACCTCACCACCACGAATGGCAGAATCCTGACCACGAATCATGCCGAAG 120310
|| | |||| | || || ||||| || | || | | || || ||| |
Sbjct 6894 CCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGCG 6835
Query 120311 TTCAGGCCGATCCCGGCTCGTTGAGCCGCATA-TTTACCCT-GCGC-CGTGTTGGCGTTA 120367
|| | ||| || ||||| ||||| | |||| || || | |||| ||| | || ||
Sbjct 6834 TTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCATT- 6776
Query 120368 AAGATCTGGTCGATATTATCACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTC 120427
||| ||| | | ||| || |||| ||||||||||| ||||| ||||| || ||
Sbjct 6775 --GATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTA 6718
Query 120428 GGGGTACGAACACCCGCCATGATCGGGGTCGG 120459
|| ||||| ||||| |||||||| || || ||
Sbjct 6717 GGAGTACGCACACCGGCCATGATAGGCGTAGG 6686
>seq5988
Length=1363
Score = 100 bits (110), Expect = 3e-16
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 146803 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAG 146862
||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1272 CGGGGTATAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGAAGGTTCGAA 1331
Query 146863 TCCAGCTACACCGACCAA 146880
||| |||||||||||
Sbjct 1332 TCCTTTCACACCGACCAA 1349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477490186802440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |