Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq3915 156 3e-33 seq2003 141 6e-29 >seq3915 Length=2367 Score = 156 bits (172), Expect = 3e-33 Identities = 584/904 (65%), Gaps = 24/904 (3%) Strand=Plus/Minus Query 72876 AAGAAGATATGTTCTTAGGTCAACATGTAAACGTATCTCGGTACGACCAACAAAAGCTTA 72935 ||||| |||||||| || || | || || || | ||||| |||||||| || | Sbjct 1046 AAGAACCCATGTTCTTCGGCCAGCCCGTCAATGTGGCGCGGTATGACCAACAGAAATATC 987 Query 72936 GTGCATTTGAAAAATTAATAGAAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAG 72995 | || || || | || || |||||| | |||||| ||||| || || ||| | | Sbjct 986 CGGTGTTCGAGAAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCG 927 Query 72996 ATGTATCAAAAGACCGTTCTGATTGGCAAAAAATGACTGACTCTGAAAAGCATATTTTCA 73055 |||| || ||||||| |||| | ||| || | || ||||||||||||||||| Sbjct 926 ATGTGTCGCAAGACCGCGCTGACTATCAAGGCCTGCCCGAGCATGAAAAGCATATTTTCA 867 Query 73056 TATCAAATCTTAAATACCAAACATTGCTTGATAGCATGGCTGCACGTTCTGTTAATATGG 73115 | || || || || || || |||| ||| ||| | ||| ||| ||| Sbjct 866 TCAGCAACCTGAAGTATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGG 807 Query 73116 TATTACTTCCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTTA 73175 || | || || || || || || || | ||||| ||||| || || ||||| ||| Sbjct 806 CCTTGTTGCCGCTGGTGTCATTGCCCGAGCTGGAAACCTGGATCGAGACCTGGGCGTTTT 747 Query 73176 GTGAAACTATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGATCCAA 73235 || || || ||||| |||||||| || || ||| | || || | || || || Sbjct 746 CCGAGACCATACACTCGCGCTCATACACCCACATCATCCGCAATATCGTCAATGACCCTT 687 Query 73236 GTGAAGTATTTGATGATATTA----CAATTAACCCTGAAATATTAAAACG--TGCTGAAA 73289 || | |||||||| || |||| || || || | || ||| || | Sbjct 686 CTGTCATGTTTGATGACATCGTGCGCAATGAA------AACATCACCGCGCGTGC-GACA 634 Query 73290 G-TATCGCCAAATACTTTGATGATGTGATACTGACAACTCAGTTC-ATTCA-ATCTCAAG 73346 | ||||||| | || | ||||| |||| | | || ||| |||| | || | Sbjct 633 GATATCGCCCATTATTACGATGAGCTGATCCAGCAGACCATGTTGTATTCGCAACTG--G 576 Query 73347 GTGAAGGTACTTATCAGGTCAATGGTGAAGAGTATGTAGTCTCAAAGCGTAAGCTTAAAG 73406 |||| || | | || ||||||| || | || ||| |||||| ||| ||| Sbjct 575 GTGAGGGCAATCATGTCATCAATGGCGAGACCAAAGTGGTCAACAAGCGTGCGCTGAAAA 516 Query 73407 AGCGACTTTATCT-TGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATCCGCTTTTACGTA 73465 ||| || || | |||| || | |||||| | | ||||| |||||||||||||| Sbjct 515 AGCTGCTCTACCGCTGCCTGATGAAC-GTCAATATCCTCGAAGCCATCCGCTTTTACGTC 457 Query 73466 AGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAGATT 73525 || || || || || || || ||||| || || || | | ||||| ||||||||||| Sbjct 456 AGCTTTGCCTGCTCGTTCGCGTTTGCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATC 397 Query 73526 ATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAGATGATTCTGAAT 73585 || || || || ||||| |||||| ||||| | || || || ||| || |||||| Sbjct 396 ATCCGCCTCATTGCGCGTGACGAAGCCCTGCACCTCACCGGCACCCAGCACATGCTGAAT 337 Query 73586 AACTGGCGAACTGGCAAGGATGATCCTGAAATGCAAGAGATTGCAGAAGACCTTAAAGAT 73645 | | ||| | ||| |||| ||| | || | ||||| || | || || | | Sbjct 336 ATCATGCGCTCCGGCCAGGACGATGCCGAGTTCGCCGAGATCGCCGCTGAGCTGCACACT 277 Query 73646 GTAAGTCTTAAGATCTTTATGGATGTTGTTGA--AGAAGAAAAGCAATGGGCAAAATATC 73703 | | || |||| || | | | || || |||||| |||||||| |||| | Sbjct 276 GAGTGCTTTGAGATGTTCAAAAGCGCCGCCGAGCAGGAGAAAA--AATGGGCAGAATACC 219 Query 73704 TATTCAAAGATGGGTCAATGATCGGTCTTAATGAAGAAATACTTTGCCAGTACGTTGAGT 73763 | || |||||||| || ||||| || | || | || || || ||||||||||| || | Sbjct 218 TGTTTAAAGATGGCTCCATGATAGGCTTGAACAAGGATATCCTGTGCCAGTACGTGGAAT 159 Query 73764 ACAT 73767 |||| Sbjct 158 ACAT 155 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 72589 ATGCAAAAGTTTGTCGATCAGGCAATCTCTGCGAACACAAATTATGACCCTACTAAATTC 72648 ||||| ||||||||||| || | || ||||| ||||| || || ||||| || || Sbjct 1752 ATGCAGAAGTTTGTCGACCAATCCATTTCTGCCAACACCAACTACGACCCGACCCGTTTT 1693 Query 72649 GCAAATGGCAAAGTCCCAGTTAAGCAAATTCTTAAAGATTTAATACGAGGCTATAAGCTT 72708 | | ||| || || | ||||| | || ||||| || | | || || ||||| Sbjct 1692 GAAGGCGGCCGCGTGCCTATGAAGCAGTTGCTCAAAGACTTGCTGCAAGTGTACAAGCTG 1633 Query 72709 GGTGTTAAAACATTCTATTACCATAACACCCGTGATGGTGCCAGTGAAGG 72758 || | ||||| | || ||||||||||| ||||||||||| | |||||| Sbjct 1632 GGCATCAAAACGCTGTACTACCATAACACGCGTGATGGTGCGACTGAAGG 1583 >seq2003 Length=7520 Score = 141 bits (156), Expect = 6e-29 Identities = 335/506 (66%), Gaps = 0/506 (0%) Strand=Plus/Plus Query 71158 CCAACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAG 71217 || || ||||| |||| ||||| |||||||| || | || || || || ||| | Sbjct 6686 CCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTACTG 6745 Query 71218 ATTGACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTAT 71277 || || ||| || ||||| || || ||||| | | || | || || |||||| Sbjct 6746 ATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAGTAT 6805 Query 71278 GTATCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCT 71337 || || |||| || || || || |||| | ||| || || || | || || Sbjct 6806 GTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAG 6865 Query 71338 ATACGCAATGGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACA 71397 ||||| || ||||| ||||| |||| | || |||| || | ||||| | Sbjct 6866 ATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCAGTCT 6925 Query 71398 GCAGTCAAATCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCT 71457 || || ||||| ||||| ||||| || | || ||||| || || || ||||||||| Sbjct 6926 GCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTCTACCCG 6985 Query 71458 ATGTGGCATTTAGAAGTTGAAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGAT 71517 ||||||| | ||||| ||| || | || ||||||| ||| || || ||||| Sbjct 6986 TTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAA 7045 Query 71518 AACCGTGTACGTCATTTAGACTATGCTGTGCAATTCAATAAGCTTATGTACCAACGATTG 71577 |||||||| |||||| | || |||| ||||| |||| || |||||||| || || Sbjct 7046 AACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCAGCGCCTG 7105 Query 71578 ATTACAGGTGGCAATATTACATTGTTCTCACCTAATGCAGTTGAAGGTTTATATGACTCA 71637 || | || || || || |||| ||||| ||| | || || || || | Sbjct 7106 ATCAAGGGCCAGAACATCACTCTGTTTTCACCGCATGATATCCCTGGCTTGTACGATGCC 7165 Query 71638 TTCTTTGCCGACCAAGATAAGTTTGA 71663 |||||||||||||| || ||||||| Sbjct 7166 TTCTTTGCCGACCAGGACGAGTTTGA 7191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335632423404811