Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq2003 403 1e-107 seq3915 223 2e-53 >seq2003 Length=7520 Score = 403 bits (446), Expect = 1e-107 Identities = 681/983 (69%), Gaps = 20/983 (2%) Strand=Plus/Plus Query 68278 GCAGCTGGCGAGCAAGTATCTCGTTCAAAACCGTGTAACTGGCGCTATCTACGAAGGGCC 68337 |||||| | | |||| || || || ||||||||||| || |||||||| | || Sbjct 6511 GCAGCTTGAGGGCAAATACCTGGTGCAAAACCGTGTCACCAAAAAAATCTACGAGAGCCC 6570 Query 68338 ACAGCAACTCTACATGCTGGTCGGCATGTGCCTGTTCCAGAATTGGGAAGATGGCTGCGC 68397 ||| |||||||| ||||| | ||| ||||||| || | ||| || Sbjct 6571 GCAGTTTCTCTACATCCTGGTGGCGATGAGCCTGTTTGCCAACTACAAAG--------GC 6622 Query 68398 CGGTAAGACGCGTCTGGAGATGGTTAAGGGCTTCTACGATGTGACCAGTACATTCAAGTT 68457 | || |||| || ||| | ||| |||| ||||||| | ||| |||||| | Sbjct 6623 C----AGGCGCGCCTCGAGTACATCAAGCGCTTTTACGATGCGGTGTCTACCTTCAAGAT 6678 Query 68458 GTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAGTTCTCCAGCTG 68517 || ||||| ||||| || |||||||| ||||| || ||||| ||||||||| | ||| Sbjct 6679 CTCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTG 6738 Query 68518 CGTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCTTCCGCAATCAT 68577 ||| ||||| || || ||| || ||| | | || | || | | ||| ||| | Sbjct 6739 CGTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGT 6798 Query 68578 CGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTGCGTGCGCTGGG 68637 | || || || | ||||| ||||| || | | || || | || |||||||| Sbjct 6799 GAAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGG 6858 Query 68638 CAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTCCTGAAACACTT 68697 ||| ||||| || ||||| || || || || | || ||| |||| || Sbjct 6859 CAGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTT 6918 Query 68698 CCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTT 68757 |||| | ||||||||||||||||| ||||||||||| || || || || || || ||| Sbjct 6919 CCAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTT 6978 Query 68758 CTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAACAACCGTGGCAT 68817 ||| ||| | |||||| | ||||| ||| ||||||||||||||||||||||| ||| | Sbjct 6979 CTACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGT 7038 Query 68818 TGAAGAGAACCGCGTTCGTCATCTCGACTATGGCGTGATGATCAACCGTCTGATGTATCG 68877 ||||| ||||| || ||||||||||| ||||||||| ||||||||| |||||||| | Sbjct 7039 AGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCA 7098 Query 68878 CCGCCTGGTGCGCAA---CGAAAACATTACGCTGTTCAGCCCACACGATGTGCCGGGCCT 68934 |||||| | ||| | | ||||| || ||||| || || ||| | || ||| | Sbjct 7099 GCGCCTGAT---CAAGGGCCAGAACATCACTCTGTTTTCACCGCATGATATCCCTGGCTT 7155 Query 68935 GTACGACGCGTTCTTTGTTGATCAGGACAAGTTCGAAGAGCTGTACCTGAAGTACGAAGC 68994 |||||| || ||||||| || |||||| |||| || |||||| |||||||||| Sbjct 7156 GTACGATGCCTTCTTTGCCGACCAGGACGAGTTTGAGCGCCTGTACACCGAGTACGAAGC 7215 Query 68995 CGACGAGAGCATCCGTAAGAAATCTATCCCGGCCGTCGACCTGTTCTCTACGCTGATGCA 69054 | || ||||| || || || || || || ||| ||||||| | | ||||| Sbjct 7216 AAATGAAAGCATACGCAAACGCAGCATTCCAGCGGTAGACTTGTTCTCGCTGGTCATGCA 7275 Query 69055 GGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCACATGAACGATCACGG 69114 |||||||||| || || ||| | || || ||||| |||||| ||| ||| | Sbjct 7276 GGAGCGTGCCGGTACCGGCCGTATCTACATCCAGAACGTTGACCACTGCAACACGCACAG 7335 Query 69115 CGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGTATGGAGATCACGCT 69174 | | || | ||| | | || ||||| | |||||||| || |||||||| ||| |||| Sbjct 7336 CCCGTTTGATCCTGCCGTGGCGCCGGTGCGTCAGTCCAACCTGTGTATGGAAATCGCGCT 7395 Query 69175 ACCGACCAAGCCACTGGCGTTCACTGACGA-TCCGAACGGGGAAATCGCGCTTTGCACCC 69233 || ||||||||| || || |||| ||||| || ||||||||||| || ||| Sbjct 7396 GCCAACCAAGCCATTGAATGACATCAACGACACCGAA-GGCGAAATCGCGCTGTGTACCT 7454 Query 69234 TGTCTGCGTTCAACCTGGGCGCG 69256 |||| || || |||||||| ||| Sbjct 7455 TGTCGGCCTTTAACCTGGGGGCG 7477 >seq3915 Length=2367 Score = 223 bits (246), Expect = 2e-53 Identities = 292/400 (73%), Gaps = 7/400 (2%) Strand=Plus/Minus Query 70294 AACGACGCAACG-AAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGA 70352 |||||| |||| || ||||| |||||| |||||||| | ||||| || || || || || Sbjct 1059 AACGAC-CAACTCAAAGAACCCATGTTCTTCGGCCAGCCCGTCAATGTGGCGCGGTATGA 1001 Query 70353 TCAGCAAAAGTACCGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCG 70412 || || || || | | ||||| |||||||| || |||||||| || ||||||||||| Sbjct 1000 CCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCG 941 Query 70413 CCCTGAAGAAGTCGACATTACCACTGACCGCATCGACT-TCAATACCAAGCTGCAAGAGC 70471 || ||||||||||| | | |||||| |||| |||| || ||| |||| Sbjct 940 TCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGGCC----TGCCCGAGC 885 Query 70472 ACGAGCGCCATATTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGG 70531 | || ||||||||| | ||||||||| || ||||||||| |||||||| | |||| Sbjct 884 ATGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGGATTCCATCCAGG 825 Query 70532 GTCGCAGTCCTAACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGG 70591 | || || ||||||| | || |||||||| | || | || |||||||| || ||| Sbjct 824 GCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGGTGTCATTGCCCGAGCTGGAAACCTGGA 765 Query 70592 TCGAGACCTGGTCGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCG 70651 ||||||||||| |||| |||||||| || ||| ||| || || ||||| |||||| Sbjct 764 TCGAGACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCATACACCCACATCATCCGCA 705 Query 70652 GTATGGTGGATGACCCTAGCATCGTTTTCGACGGCATCGT 70691 ||| || |||||||| || | || || | |||||| Sbjct 704 ATATCGTCAATGACCCTTCTGTCATGTTTGATGACATCGT 665 Score = 217 bits (240), Expect = 1e-51 Identities = 281/388 (72%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 69675 ATGGTCTGCGTAACTCAACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGATCA 69734 |||| |||||||||| || |||||||| | ||||| | |||||||||||||||||| Sbjct 1979 ATGGCTTGCGTAACTCCACCCTGACCGCGCTGATGCCTTCAGAGACGTCCAGCCAGATCG 1920 Query 69735 CCAACTCCACCAATGGTATTGAGCCGCCCCGCGGCCCGGTATCCGTGAAGTCTTCCAAAG 69794 ||||| ||||||| ||||| ||||| || || |||| ||| || || ||| ||||||| Sbjct 1919 CCAACGCCACCAACGGTATCGAGCCACCGCGTGGCCTGGTGTCGGTCAAGCAGTCCAAAG 1860 Query 69795 ACGGCATCGTGAAGATGGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAGTACC 69854 |||||||| || ||| || || || | | | ||| |||||||| ||| | Sbjct 1859 ACGGCATCCTGCGCCAGGTAGTGCCTGAGATTGAGCGCCTGCGCGACCAGTATCAGTTAC 1800 Query 69855 TGTGGGATATGCCGGATAACCGCGGCTATCTGACTAAGGTGGCCATCATTCAGAAGTTCT 69914 ||||| | |||||| | ||| ||| || |||| ||| | | || |||||||| Sbjct 1799 TGTGGAAAATGCCGAACAACGACGGTTACCTGAAGCTGGTCGGTGTGATGCAGAAGTTTG 1740 Query 69915 TCGATCAGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCGACAAGG 69974 |||| || |||| ||||| |||||||||||||||||||| || || |||| | | Sbjct 1739 TCGACCAATCCATTTCTGCCAACACCAACTACGACCCGACCCGTTTTGAAGGCGGCCGCG 1680 Query 69975 TTCCAATGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGAAGACGC 70034 | || |||| | || |||| |||| ||||| | ||| ||| || | || |||| Sbjct 1679 TGCCTATGAAGCAGTTGCTCAAAGACTTGCTGCAAGTGTACAAGCTGGGCATCAAAACGC 1620 Query 70035 TTTATTACCACAACACGCGTGATGGCGC 70062 | || ||||| |||||||||||||| || Sbjct 1619 TGTACTACCATAACACGCGTGATGGTGC 1592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330394616059380