Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_018843.1
Length=103299
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 403 1e-107
seq3915 223 2e-53
>seq2003
Length=7520
Score = 403 bits (446), Expect = 1e-107
Identities = 681/983 (69%), Gaps = 20/983 (2%)
Strand=Plus/Plus
Query 68278 GCAGCTGGCGAGCAAGTATCTCGTTCAAAACCGTGTAACTGGCGCTATCTACGAAGGGCC 68337
|||||| | | |||| || || || ||||||||||| || |||||||| | ||
Sbjct 6511 GCAGCTTGAGGGCAAATACCTGGTGCAAAACCGTGTCACCAAAAAAATCTACGAGAGCCC 6570
Query 68338 ACAGCAACTCTACATGCTGGTCGGCATGTGCCTGTTCCAGAATTGGGAAGATGGCTGCGC 68397
||| |||||||| ||||| | ||| ||||||| || | ||| ||
Sbjct 6571 GCAGTTTCTCTACATCCTGGTGGCGATGAGCCTGTTTGCCAACTACAAAG--------GC 6622
Query 68398 CGGTAAGACGCGTCTGGAGATGGTTAAGGGCTTCTACGATGTGACCAGTACATTCAAGTT 68457
| || |||| || ||| | ||| |||| ||||||| | ||| |||||| |
Sbjct 6623 C----AGGCGCGCCTCGAGTACATCAAGCGCTTTTACGATGCGGTGTCTACCTTCAAGAT 6678
Query 68458 GTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAGTTCTCCAGCTG 68517
|| ||||| ||||| || |||||||| ||||| || ||||| ||||||||| | |||
Sbjct 6679 CTCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTG 6738
Query 68518 CGTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCTTCCGCAATCAT 68577
||| ||||| || || ||| || ||| | | || | || | | ||| ||| |
Sbjct 6739 CGTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGT 6798
Query 68578 CGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTGCGTGCGCTGGG 68637
| || || || | ||||| ||||| || | | || || | || ||||||||
Sbjct 6799 GAAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGG 6858
Query 68638 CAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTCCTGAAACACTT 68697
||| ||||| || ||||| || || || || | || ||| |||| ||
Sbjct 6859 CAGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTT 6918
Query 68698 CCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTT 68757
|||| | ||||||||||||||||| ||||||||||| || || || || || || |||
Sbjct 6919 CCAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTT 6978
Query 68758 CTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAACAACCGTGGCAT 68817
||| ||| | |||||| | ||||| ||| ||||||||||||||||||||||| ||| |
Sbjct 6979 CTACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGT 7038
Query 68818 TGAAGAGAACCGCGTTCGTCATCTCGACTATGGCGTGATGATCAACCGTCTGATGTATCG 68877
||||| ||||| || ||||||||||| ||||||||| ||||||||| |||||||| |
Sbjct 7039 AGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCA 7098
Query 68878 CCGCCTGGTGCGCAA---CGAAAACATTACGCTGTTCAGCCCACACGATGTGCCGGGCCT 68934
|||||| | ||| | | ||||| || ||||| || || ||| | || ||| |
Sbjct 7099 GCGCCTGAT---CAAGGGCCAGAACATCACTCTGTTTTCACCGCATGATATCCCTGGCTT 7155
Query 68935 GTACGACGCGTTCTTTGTTGATCAGGACAAGTTCGAAGAGCTGTACCTGAAGTACGAAGC 68994
|||||| || ||||||| || |||||| |||| || |||||| ||||||||||
Sbjct 7156 GTACGATGCCTTCTTTGCCGACCAGGACGAGTTTGAGCGCCTGTACACCGAGTACGAAGC 7215
Query 68995 CGACGAGAGCATCCGTAAGAAATCTATCCCGGCCGTCGACCTGTTCTCTACGCTGATGCA 69054
| || ||||| || || || || || || ||| ||||||| | | |||||
Sbjct 7216 AAATGAAAGCATACGCAAACGCAGCATTCCAGCGGTAGACTTGTTCTCGCTGGTCATGCA 7275
Query 69055 GGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCACATGAACGATCACGG 69114
|||||||||| || || ||| | || || ||||| |||||| ||| ||| |
Sbjct 7276 GGAGCGTGCCGGTACCGGCCGTATCTACATCCAGAACGTTGACCACTGCAACACGCACAG 7335
Query 69115 CGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGTATGGAGATCACGCT 69174
| | || | ||| | | || ||||| | |||||||| || |||||||| ||| ||||
Sbjct 7336 CCCGTTTGATCCTGCCGTGGCGCCGGTGCGTCAGTCCAACCTGTGTATGGAAATCGCGCT 7395
Query 69175 ACCGACCAAGCCACTGGCGTTCACTGACGA-TCCGAACGGGGAAATCGCGCTTTGCACCC 69233
|| ||||||||| || || |||| ||||| || ||||||||||| || |||
Sbjct 7396 GCCAACCAAGCCATTGAATGACATCAACGACACCGAA-GGCGAAATCGCGCTGTGTACCT 7454
Query 69234 TGTCTGCGTTCAACCTGGGCGCG 69256
|||| || || |||||||| |||
Sbjct 7455 TGTCGGCCTTTAACCTGGGGGCG 7477
>seq3915
Length=2367
Score = 223 bits (246), Expect = 2e-53
Identities = 292/400 (73%), Gaps = 7/400 (2%)
Strand=Plus/Minus
Query 70294 AACGACGCAACG-AAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGA 70352
|||||| |||| || ||||| |||||| |||||||| | ||||| || || || || ||
Sbjct 1059 AACGAC-CAACTCAAAGAACCCATGTTCTTCGGCCAGCCCGTCAATGTGGCGCGGTATGA 1001
Query 70353 TCAGCAAAAGTACCGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCG 70412
|| || || || | | ||||| |||||||| || |||||||| || |||||||||||
Sbjct 1000 CCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCG 941
Query 70413 CCCTGAAGAAGTCGACATTACCACTGACCGCATCGACT-TCAATACCAAGCTGCAAGAGC 70471
|| ||||||||||| | | |||||| |||| |||| || ||| ||||
Sbjct 940 TCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGGCC----TGCCCGAGC 885
Query 70472 ACGAGCGCCATATTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGG 70531
| || ||||||||| | ||||||||| || ||||||||| |||||||| | ||||
Sbjct 884 ATGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGGATTCCATCCAGG 825
Query 70532 GTCGCAGTCCTAACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGG 70591
| || || ||||||| | || |||||||| | || | || |||||||| || |||
Sbjct 824 GCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGGTGTCATTGCCCGAGCTGGAAACCTGGA 765
Query 70592 TCGAGACCTGGTCGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCG 70651
||||||||||| |||| |||||||| || ||| ||| || || ||||| ||||||
Sbjct 764 TCGAGACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCATACACCCACATCATCCGCA 705
Query 70652 GTATGGTGGATGACCCTAGCATCGTTTTCGACGGCATCGT 70691
||| || |||||||| || | || || | ||||||
Sbjct 704 ATATCGTCAATGACCCTTCTGTCATGTTTGATGACATCGT 665
Score = 217 bits (240), Expect = 1e-51
Identities = 281/388 (72%), Gaps = 0/388 (0%)
Strand=Plus/Minus
Query 69675 ATGGTCTGCGTAACTCAACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGATCA 69734
|||| |||||||||| || |||||||| | ||||| | ||||||||||||||||||
Sbjct 1979 ATGGCTTGCGTAACTCCACCCTGACCGCGCTGATGCCTTCAGAGACGTCCAGCCAGATCG 1920
Query 69735 CCAACTCCACCAATGGTATTGAGCCGCCCCGCGGCCCGGTATCCGTGAAGTCTTCCAAAG 69794
||||| ||||||| ||||| ||||| || || |||| ||| || || ||| |||||||
Sbjct 1919 CCAACGCCACCAACGGTATCGAGCCACCGCGTGGCCTGGTGTCGGTCAAGCAGTCCAAAG 1860
Query 69795 ACGGCATCGTGAAGATGGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAGTACC 69854
|||||||| || ||| || || || | | | ||| |||||||| ||| |
Sbjct 1859 ACGGCATCCTGCGCCAGGTAGTGCCTGAGATTGAGCGCCTGCGCGACCAGTATCAGTTAC 1800
Query 69855 TGTGGGATATGCCGGATAACCGCGGCTATCTGACTAAGGTGGCCATCATTCAGAAGTTCT 69914
||||| | |||||| | ||| ||| || |||| ||| | | || ||||||||
Sbjct 1799 TGTGGAAAATGCCGAACAACGACGGTTACCTGAAGCTGGTCGGTGTGATGCAGAAGTTTG 1740
Query 69915 TCGATCAGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCGACAAGG 69974
|||| || |||| ||||| |||||||||||||||||||| || || |||| | |
Sbjct 1739 TCGACCAATCCATTTCTGCCAACACCAACTACGACCCGACCCGTTTTGAAGGCGGCCGCG 1680
Query 69975 TTCCAATGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGAAGACGC 70034
| || |||| | || |||| |||| ||||| | ||| ||| || | || ||||
Sbjct 1679 TGCCTATGAAGCAGTTGCTCAAAGACTTGCTGCAAGTGTACAAGCTGGGCATCAAAACGC 1620
Query 70035 TTTATTACCACAACACGCGTGATGGCGC 70062
| || ||||| |||||||||||||| ||
Sbjct 1619 TGTACTACCATAACACGCGTGATGGTGC 1592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330394616059380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |