Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq315 114 1e-20 seq633 104 2e-17 >seq315 Length=59289 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || ||| || | || || | ||||| || ||||| ||| || || || || || || Sbjct 38262 GTTGCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTC 38321 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | || |||| |||| |||||| |||||||| ||||| ||||| || || | Sbjct 38322 ACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGG 38381 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | |||||||||||| ||||| || || ||| | | || || |||| ||| Sbjct 38382 CGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTC 38441 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||| ||| ||||| || || ||||| || || || ||||||||||| Sbjct 38442 CACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| || || || || ||||| || || | || Sbjct 38578 AGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGG 38637 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| |||||||| ||||| ||||| || || | || | ||||||| Sbjct 38638 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38697 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || ||| | | || || |||| |||||| |||| ||| Sbjct 38698 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTG 38757 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || || ||||| || || || |||||||||||| || Sbjct 38758 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTG 38799 >seq633 Length=24710 Score = 104 bits (114), Expect = 2e-17 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 9115 TTCACGACAAAGTCTGT-GTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTA 9173 || ||| |||||||| |||| | || |||||||| | ||| ||||||||||| | ||| Sbjct 14748 TTGACGGCAAAGTCTTCCGTCG-AGTGGTTGAACAGGAGCACGCCCACGTTACCGCGGTA 14690 Query 9174 ATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCG 9233 ||| ||||||| |||||||| || ||||||||| | ||| | ||| || || ||||| Sbjct 14689 ATCGGCATCGATGACACCAGCGCCAGTGTCGATGAAATTCTTCAGCGCAAGACCCGAGCG 14630 Query 9234 GGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAA-GTCGGTCATGACCA 9292 ||||| | || ||||||| | | || | ||| |||| ||| ||| |||||| Sbjct 14629 AGGCGCCACGCGGGCGTAGCAGCTGTCAGG-CACAGCAATGGCAAGGTCCGTCTTGACCA 14571 Query 9293 GCCCCTTG 9300 | |||||| Sbjct 14570 GACCCTTG 14563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380894502029409