Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq315 114 1e-20
seq633 104 2e-17
>seq315
Length=59289
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595
|| ||| || | || || | ||||| || ||||| ||| || || || || || ||
Sbjct 38262 GTTGCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTC 38321
Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655
| || | || |||| |||| |||||| |||||||| ||||| ||||| || || |
Sbjct 38322 ACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGG 38381
Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715
|| | |||||||||||| ||||| || || ||| | | || || |||| |||
Sbjct 38382 CGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTC 38441
Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| |||| ||| ||||| || || ||||| || || || |||||||||||
Sbjct 38442 CACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492
Score = 113 bits (124), Expect = 3e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || ||||| || || || || ||||| || || | ||
Sbjct 38578 AGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGG 38637
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| |||||||| ||||| ||||| || || | || | |||||||
Sbjct 38638 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38697
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || ||| | | || || |||| |||||| |||| |||
Sbjct 38698 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTG 38757
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||||| || || ||||| || || || |||||||||||| ||
Sbjct 38758 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTG 38799
>seq633
Length=24710
Score = 104 bits (114), Expect = 2e-17
Identities = 139/188 (74%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 9115 TTCACGACAAAGTCTGT-GTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTA 9173
|| ||| |||||||| |||| | || |||||||| | ||| ||||||||||| | |||
Sbjct 14748 TTGACGGCAAAGTCTTCCGTCG-AGTGGTTGAACAGGAGCACGCCCACGTTACCGCGGTA 14690
Query 9174 ATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCG 9233
||| ||||||| |||||||| || ||||||||| | ||| | ||| || || |||||
Sbjct 14689 ATCGGCATCGATGACACCAGCGCCAGTGTCGATGAAATTCTTCAGCGCAAGACCCGAGCG 14630
Query 9234 GGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAA-GTCGGTCATGACCA 9292
||||| | || ||||||| | | || | ||| |||| ||| ||| ||||||
Sbjct 14629 AGGCGCCACGCGGGCGTAGCAGCTGTCAGG-CACAGCAATGGCAAGGTCCGTCTTGACCA 14571
Query 9293 GCCCCTTG 9300
| ||||||
Sbjct 14570 GACCCTTG 14563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380894502029409
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |