Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2003 255 7e-63 >seq2003 Length=7520 Score = 255 bits (282), Expect = 7e-63 Identities = 324/446 (73%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 40720 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 40779 ||||||||||| ||||| |||||||||||||||||||| |||||| | || || | Sbjct 6686 CCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTACTG 6745 Query 40780 ATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTAT 40839 ||||| | | ||| |||| | || || || |||||||||||||||| Sbjct 6746 ATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAGTAT 6805 Query 40840 ATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAA 40899 |||| ||||| || || || || |||||||| || | ||| ||||| |||| | Sbjct 6806 GTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAG 6865 Query 40900 ATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACG 40959 || ||||| || ||||| |||||| || | ||||||| |||| | ||| | Sbjct 6866 ATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCAGTCT 6925 Query 40960 GCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCG 41019 ||||| |||||||| || ||||||||||| || ||||| || || || ||| || ||| Sbjct 6926 GCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTCTACCCG 6985 Query 41020 ATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAA 41079 | ||||| |||||||| ||| ||| |||| |||||||| ||||| ||||| |||||| Sbjct 6986 TTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAA 7045 Query 41080 AACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTA 41139 |||||| | ||||| || ||||||||||| ||| | ||| ||||||| |||| | Sbjct 7046 AACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCAGCGCCTG 7105 Query 41140 ATCAATAACGATTACATCACTCTGTT 41165 ||||| | | ||||||||||||| Sbjct 7106 ATCAAGGGCCAGAACATCACTCTGTT 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570023448228040