Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019402.1 Length=76631 Score E Sequences producing significant alignments: (Bits) Value seq6517 122 4e-23 >seq6517 Length=1260 Score = 122 bits (134), Expect = 4e-23 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 69077 CAACCCTTTGGCAGACTTCTTAGTACCATCATCGGTCGCTGGGTCTTTGAAGATTTCACG 69136 ||| |||||||| || ||||| || ||||| || || ||||||||| | || || | Sbjct 115 CAAGCCTTTGGCCGATTTCTTGGTGCCATCGTCTGTAATAGGGTCTTTGTATATCTCTCT 174 Query 69137 ACCAACACCATTAACTTCACCATAGGTTGCTTTCATGGCGAAACCAAAGGTATCACGGGT 69196 ||| | || || ||||| ||||| || ||||||||||| || || |||||||||||||| Sbjct 175 ACCTTCGCCGTTTACTTCTCCATAAGTGGCTTTCATGGCAAAGCCGAAGGTATCACGGGT 234 Query 69197 TACATACTGGTAAGTGTATGAACCAATGCCGAGTACTACGTTTGAAGATGCGAAATCCTT 69256 || || ||||| ||||| |||| ||| || || || || | ||| || ||| |||| Sbjct 235 ATTGTATTGATAAGTATATGAGCCAACGCCTAGCACAACATTGGTAGAGGC-AAAGCCTT 293 Query 69257 CGCG-GCGAGGCGAGCAAAGATTTCTTCGGCACGTTCCATAGTGATTGAATCACCATAAA 69315 | | || || |||||| | || | | | ||| |||| ||| ||||||| Sbjct 294 TTTGCTTTAATCGTTCACAGATTTGTGTAGCTCTTGCTATATTGATGCTATCGCCATAAA 353 Query 69316 TCAGGCCAATCTTCGGATTAAGAA--CCTTGAAGCCTTTCTTATTGATGGTGCCACCGAA 69373 | |||| | || | || || | || ||||||| |||| || | |||||||| Sbjct 354 T--GGCCCCTATTGTGGGTAGTAATTCTTTATAGCCTTTTGCATTGGTGATACCACCGAA 411 Query 69374 GGTA 69377 |||| Sbjct 412 GGTA 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245066670862096