Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019402.1
Length=76631
Score E
Sequences producing significant alignments: (Bits) Value
seq6517 122 4e-23
>seq6517
Length=1260
Score = 122 bits (134), Expect = 4e-23
Identities = 212/304 (70%), Gaps = 6/304 (2%)
Strand=Plus/Plus
Query 69077 CAACCCTTTGGCAGACTTCTTAGTACCATCATCGGTCGCTGGGTCTTTGAAGATTTCACG 69136
||| |||||||| || ||||| || ||||| || || ||||||||| | || || |
Sbjct 115 CAAGCCTTTGGCCGATTTCTTGGTGCCATCGTCTGTAATAGGGTCTTTGTATATCTCTCT 174
Query 69137 ACCAACACCATTAACTTCACCATAGGTTGCTTTCATGGCGAAACCAAAGGTATCACGGGT 69196
||| | || || ||||| ||||| || ||||||||||| || || ||||||||||||||
Sbjct 175 ACCTTCGCCGTTTACTTCTCCATAAGTGGCTTTCATGGCAAAGCCGAAGGTATCACGGGT 234
Query 69197 TACATACTGGTAAGTGTATGAACCAATGCCGAGTACTACGTTTGAAGATGCGAAATCCTT 69256
|| || ||||| ||||| |||| ||| || || || || | ||| || ||| ||||
Sbjct 235 ATTGTATTGATAAGTATATGAGCCAACGCCTAGCACAACATTGGTAGAGGC-AAAGCCTT 293
Query 69257 CGCG-GCGAGGCGAGCAAAGATTTCTTCGGCACGTTCCATAGTGATTGAATCACCATAAA 69315
| | || || |||||| | || | | | ||| |||| ||| |||||||
Sbjct 294 TTTGCTTTAATCGTTCACAGATTTGTGTAGCTCTTGCTATATTGATGCTATCGCCATAAA 353
Query 69316 TCAGGCCAATCTTCGGATTAAGAA--CCTTGAAGCCTTTCTTATTGATGGTGCCACCGAA 69373
| |||| | || | || || | || ||||||| |||| || | ||||||||
Sbjct 354 T--GGCCCCTATTGTGGGTAGTAATTCTTTATAGCCTTTTGCATTGGTGATACCACCGAA 411
Query 69374 GGTA 69377
||||
Sbjct 412 GGTA 415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 245066670862096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |