Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq5850 87.8 3e-12 seq4536 87.8 3e-12 >seq5850 Length=1395 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 169179 GGAACCGCACGTTCGATCGCCGAACGCATCGCCGCCAAGTTGTCCGGCAGTTGCGAAGCA 169238 || ||||| || ||||| ||| | ||||| | || | |||| ||||| | || Sbjct 607 GGCACCGCCCGCTCGATGTGCGACCTCATCGACCGCAGGCTGTCGGGCAGGTCGCTCGCG 548 Query 169239 GTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTACGGG 169298 |||| ||| || || || |||| |||||||||||||||||||||||||| ||| Sbjct 547 GTCACATCGGTCCGGACCGCGGTCATTCCGCAGCCGATGTCGACGCCGACCGCCGCGGGG 488 Query 169299 ATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTGGACG 169358 ||||| ||| ||| ||| || ||||| || | || || | || |||||||| Sbjct 487 GCGACCGCCTCCCGCATCGCGATGACGGAACCGACCGTCGCACCCTTGCCCACGTGGACG 428 Query 169359 TCGGGCATCAC 169369 |||||||| || Sbjct 427 TCGGGCATGAC 417 >seq4536 Length=1895 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 1632 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 1691 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 1692 CCTGCCCCCGCAACCA 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895662457506360