Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019407.1
Length=218929
Score E
Sequences producing significant alignments: (Bits) Value
seq5850 89.7 7e-13
>seq5850
Length=1395
Score = 89.7 bits (98), Expect = 7e-13
Identities = 197/293 (67%), Gaps = 2/293 (1%)
Strand=Plus/Minus
Query 135506 TTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTG-GCCTTGATCTGGT 135564
|||| |||||||||| |||||||| || | || ||||| || ||| | | |||
Sbjct 1388 TTCGGCGATCACGCCGGCGTCCTTGCGCGATTCGACGCCGGACGTCTGCCGCGC-CAGGT 1330
Query 135565 CCTCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCG 135624
| || | |||||| | ||| |||| || || ||||||||| ||||| |||||||
Sbjct 1329 CGTCGACGGTGAACCGCTTCTTCGCCTTCGTGCGGCTCATCGTCCGTCCCGCCCCGTGCG 1270
Query 135625 AGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCA 135684
| |||| ||| || | | |||| ||| ||||| | |||||| || ||||
Sbjct 1269 ACGCCGAGTTGAAGGACAACTCGGAGCCCAGGCCCCGCACCACGTAGGAACCGGTACCCA 1210
Query 135685 TCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 135744
|||| |||||||||| ||||| | || |||| | ||| ||||| || || |
Sbjct 1209 TCGACCCGGGGATGAGCCCGAGATCACCCCGGCCCGCCCGGATCGCCCCCTTACGCGTGA 1150
Query 135745 CGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAG 135797
| | | | |||| || | || |||| | || |||||||||||||||
Sbjct 1149 CCAGCATCGGCTCGCCGTCGACGATCTCCTCCGACACATAGTTGTGGTGGCAG 1097
Score = 87.8 bits (96), Expect = 3e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 136334 CAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCC 136393
|||||||||||| ||||| |||||||| ||| |||||||| |||| ||||||||
Sbjct 572 CAGGCTGTCGGGCAGGTCGCTCGCGGTCACATCGGTCCGGACCGCGGTCATTCCGCAGCC 513
Query 136394 GATGTCGACGCCGACGGCGGCCGGGATGATCGC 136426
||||||||||||||| || || ||| || |||
Sbjct 512 GATGTCGACGCCGACCGCCGCGGGGGCGACCGC 480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 700363522136520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |