Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq5850 89.7 7e-13 >seq5850 Length=1395 Score = 89.7 bits (98), Expect = 7e-13 Identities = 197/293 (67%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 135506 TTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTG-GCCTTGATCTGGT 135564 |||| |||||||||| |||||||| || | || ||||| || ||| | | ||| Sbjct 1388 TTCGGCGATCACGCCGGCGTCCTTGCGCGATTCGACGCCGGACGTCTGCCGCGC-CAGGT 1330 Query 135565 CCTCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCG 135624 | || | |||||| | ||| |||| || || ||||||||| ||||| ||||||| Sbjct 1329 CGTCGACGGTGAACCGCTTCTTCGCCTTCGTGCGGCTCATCGTCCGTCCCGCCCCGTGCG 1270 Query 135625 AGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCA 135684 | |||| ||| || | | |||| ||| ||||| | |||||| || |||| Sbjct 1269 ACGCCGAGTTGAAGGACAACTCGGAGCCCAGGCCCCGCACCACGTAGGAACCGGTACCCA 1210 Query 135685 TCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 135744 |||| |||||||||| ||||| | || |||| | ||| ||||| || || | Sbjct 1209 TCGACCCGGGGATGAGCCCGAGATCACCCCGGCCCGCCCGGATCGCCCCCTTACGCGTGA 1150 Query 135745 CGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAG 135797 | | | | |||| || | || |||| | || ||||||||||||||| Sbjct 1149 CCAGCATCGGCTCGCCGTCGACGATCTCCTCCGACACATAGTTGTGGTGGCAG 1097 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 136334 CAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCC 136393 |||||||||||| ||||| |||||||| ||| |||||||| |||| |||||||| Sbjct 572 CAGGCTGTCGGGCAGGTCGCTCGCGGTCACATCGGTCCGGACCGCGGTCATTCCGCAGCC 513 Query 136394 GATGTCGACGCCGACGGCGGCCGGGATGATCGC 136426 ||||||||||||||| || || ||| || ||| Sbjct 512 GATGTCGACGCCGACCGCCGCGGGGGCGACCGC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700363522136520