Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq5850 95.1 2e-14 >seq5850 Length=1395 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 140310 AGGCTGTCGGGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCG 140369 ||||||||||||||||| || ||| ||| || || || |||| ||||||||| Sbjct 571 AGGCTGTCGGGCAGGTCGCTCGCGGTCACATCGGTCCGGACCGCGGTCATTCCGCAGCCG 512 Query 140370 ATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACG 140429 ||||| ||||| || ||||| ||| || || || ||| ||| || || || || Sbjct 511 ATGTCGACGCCGACCGCCGCGGGGGCGACCGCCTCCCGCATCGCGATGACGGAACCGACC 452 Query 140430 GTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGC 140489 |||| || |||||| ||||||||| ||||| | | ||| | ||| | ||||| Sbjct 451 GTCGCACCCTTGCCCACGTGGACGTCGGGCATGACGCGCAC---CCCGTGCACCCACGGC 395 Query 140490 AGGGCGGCGAGGTTGTGCGCCTGCACCTGGGCGGGCTGCTCGAAGGTC 140537 ||| |||| | ||| || |||| | || | |||||||| |||| Sbjct 394 AGGTCGGCCATGTTCCGCAACTGCTGCAACGCAGCCTGCTCGATGGTC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715692943142400