Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq5850 91.5 2e-13 >seq5850 Length=1395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCC-CTCGGTGGCCTTGATCTGGTCCTCCAGGG 136136 |||||||||||||||||| | || ||||| || ||| | | |||| || | || Sbjct 1379 CACGCCGGCGTCCTTGCGCGATTCGACGCCGGACGTCTGCCGCG-CCAGGTCGTCGACGG 1321 Query 136137 TGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 |||| | ||| |||| || || ||||||||| ||||| |||||||| |||| Sbjct 1320 TGAACCGCTTCTTCGCCTTCGTGCGGCTCATCGTCCGTCCCGCCCCGTGCGACGCCGAGT 1261 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 ||| || | || |||| ||| ||||| | |||||| || |||||||| |||| Sbjct 1260 TGAAGGACAACTCGGAGCCCAGGCCCCGCACCACGTAGGAACCGGTACCCATCGACCCGG 1201 Query 136257 GGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCC 136316 |||||| ||||| | || |||| | ||| ||||| || || || | | | Sbjct 1200 GGATGAGCCCGAGATCACCCCGGCCCGCCCGGATCGCCCCCTTACGCGTGACCAGCATCG 1141 Query 136317 ACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAG 136360 |||| || | || |||| | || ||||||||||||||| Sbjct 1140 GCTCGCCGTCGACGATCTCCTCCGACACATAGTTGTGGTGGCAG 1097 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 136898 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 136957 ||||||||||| ||||| |||||||| ||| |||||||| |||| ||||||||| Sbjct 571 AGGCTGTCGGGCAGGTCGCTCGCGGTCACATCGGTCCGGACCGCGGTCATTCCGCAGCCG 512 Query 136958 ATGTCGACGCCGACGGCGGCCGGGATGATCGC 136989 |||||||||||||| || || ||| || ||| Sbjct 511 ATGTCGACGCCGACCGCCGCGGGGGCGACCGC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701281815567680