Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019448.1 Length=139806 Score E Sequences producing significant alignments: (Bits) Value seq6517 129 5e-25 >seq6517 Length=1260 Score = 129 bits (142), Expect = 5e-25 Identities = 318/474 (67%), Gaps = 10/474 (2%) Strand=Plus/Minus Query 135091 GAATATGAAACATACAAACGTATGTTAACAGAAATTTATCCAACAGGAGTATTCTCTATT 135150 |||| |||||| | |||||| || | |||||| | ||||| | ||| | | |||||| Sbjct 663 GAATTTGAAACTTTCAAACGCCTGATTACAGAAGTGTATCCGAAAGGTATTGTTTCTATT 604 Query 135151 GTATCTGATACTTGGGACTTTTGG--GGTAATATGACTAAAACTTTACCTAGGTTAAAAG 135208 || ||||| ||||||||||| ||| ||| || || || |||||| |||||| Sbjct 603 GTGTCTGACACTTGGGACTTATGGAAAGTATTA--ACCGAATACTTACCTGCCTTAAAAA 546 Query 135209 ATATTATTATGGAACGTGACGGTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTA 135268 || || || | | |||| |||||||| || |||| ||| || |||||||| Sbjct 545 ATGAAATAGTGAATAGAAACGGCAAAGTAGTGATTCGACCGGATTCGGGCGACCCTGTGG 486 Query 135269 AGATTATTTGTGGTGACCCTGATGCAGATACTGAGTATGAACGTAAAGGTGCTGTAGAAG 135328 | ||||| ||||| | ||||| | | | || | ||| ||||| | | | || Sbjct 485 ATATTATCTGTGGCAATCCTGACGGAAAAACCACCGAAGAAAAAAAAGGGGTTATTGAGT 426 Query 135329 TACTTTGGGATACTTTTGGAGGTACTGAAACTGAAAAAGGATATAAAGTACTA-GATGAA 135387 | | |||||||| || || |||| | || |||||| ||||||| | || | | Sbjct 425 TGTTATGGGATACCTTCGGTGGTATCACCAATGCAAAAGGCTATAAAGAATTACTACCCA 366 Query 135388 CATGTAGGATTAATCTATGGTGATTCTATTAACTATGAGC--GTGCTCAGCAAATTTGTG 135445 || |||| || ||||| ||| || || ||| ||| | ||| ||||| |||| Sbjct 365 CA-ATAGGGGCCATTTATGGCGATAGCATCAA-TAT-AGCAAGAGCTACACAAATCTGTG 309 Query 135446 AGGGATTAAAAGCAAAAGGTTTTGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCT 135505 | ||||||| |||||| ||||| || || ||||| |||| || || | Sbjct 308 AACGATTAAAGCAAAAAGGCTTTGCCTCTACCAATGTTGTGCTAGGCGTTGGCTCATATA 249 Query 135506 CTTATCAATTTAATACTCGTGATACTCATGGGTTTGCAATCAAAGCAACATATG 135559 ||||||||| ||||| |||||||| || ||||| || ||||| || |||| Sbjct 248 CTTATCAATACAATACCCGTGATACCTTCGGCTTTGCCATGAAAGCCACTTATG 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447199302088880