Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019448.1
Length=139806
Score E
Sequences producing significant alignments: (Bits) Value
seq6517 129 5e-25
>seq6517
Length=1260
Score = 129 bits (142), Expect = 5e-25
Identities = 318/474 (67%), Gaps = 10/474 (2%)
Strand=Plus/Minus
Query 135091 GAATATGAAACATACAAACGTATGTTAACAGAAATTTATCCAACAGGAGTATTCTCTATT 135150
|||| |||||| | |||||| || | |||||| | ||||| | ||| | | ||||||
Sbjct 663 GAATTTGAAACTTTCAAACGCCTGATTACAGAAGTGTATCCGAAAGGTATTGTTTCTATT 604
Query 135151 GTATCTGATACTTGGGACTTTTGG--GGTAATATGACTAAAACTTTACCTAGGTTAAAAG 135208
|| ||||| ||||||||||| ||| ||| || || || |||||| ||||||
Sbjct 603 GTGTCTGACACTTGGGACTTATGGAAAGTATTA--ACCGAATACTTACCTGCCTTAAAAA 546
Query 135209 ATATTATTATGGAACGTGACGGTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTA 135268
|| || || | | |||| |||||||| || |||| ||| || ||||||||
Sbjct 545 ATGAAATAGTGAATAGAAACGGCAAAGTAGTGATTCGACCGGATTCGGGCGACCCTGTGG 486
Query 135269 AGATTATTTGTGGTGACCCTGATGCAGATACTGAGTATGAACGTAAAGGTGCTGTAGAAG 135328
| ||||| ||||| | ||||| | | | || | ||| ||||| | | | ||
Sbjct 485 ATATTATCTGTGGCAATCCTGACGGAAAAACCACCGAAGAAAAAAAAGGGGTTATTGAGT 426
Query 135329 TACTTTGGGATACTTTTGGAGGTACTGAAACTGAAAAAGGATATAAAGTACTA-GATGAA 135387
| | |||||||| || || |||| | || |||||| ||||||| | || | |
Sbjct 425 TGTTATGGGATACCTTCGGTGGTATCACCAATGCAAAAGGCTATAAAGAATTACTACCCA 366
Query 135388 CATGTAGGATTAATCTATGGTGATTCTATTAACTATGAGC--GTGCTCAGCAAATTTGTG 135445
|| |||| || ||||| ||| || || ||| ||| | ||| ||||| ||||
Sbjct 365 CA-ATAGGGGCCATTTATGGCGATAGCATCAA-TAT-AGCAAGAGCTACACAAATCTGTG 309
Query 135446 AGGGATTAAAAGCAAAAGGTTTTGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCT 135505
| ||||||| |||||| ||||| || || ||||| |||| || || |
Sbjct 308 AACGATTAAAGCAAAAAGGCTTTGCCTCTACCAATGTTGTGCTAGGCGTTGGCTCATATA 249
Query 135506 CTTATCAATTTAATACTCGTGATACTCATGGGTTTGCAATCAAAGCAACATATG 135559
||||||||| ||||| |||||||| || ||||| || ||||| || ||||
Sbjct 248 CTTATCAATACAATACCCGTGATACCTTCGGCTTTGCCATGAAAGCCACTTATG 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447199302088880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |