Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq69 127 4e-24
>seq69
Length=63067
Score = 127 bits (140), Expect = 4e-24
Identities = 310/463 (67%), Gaps = 10/463 (2%)
Strand=Plus/Plus
Query 25576 GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAAC 25635
|||| || ||| ||||| | ||| | || |||||||||||| |||||| || ||||||
Sbjct 12653 GAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAAC 12712
Query 25636 GAGAATCTGTGCGAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTA 25694
||||||||| | || || | || ||||||| ||| | ||| || ||| || ||
Sbjct 12713 GAGAATCTGGCCATGAACTTTAGCAATGAAGTGCAAGTGC-CGGAAGCTCGGTGCTTTTA 12771
Query 25695 CGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT--- 25751
|| |||||||| || || ||||| | ||||| || || ||| | ||| || ||
Sbjct 12772 TGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTC---GCTGCTCATTGA 12828
Query 25752 GACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACC 25811
|||||||||| ||| | | |||| |||| || | | || || ||| ||| ||
Sbjct 12829 CACGTACATTAAAGAGGCGACGGAGAAGGATCACCTTCTGCGCGCGATTGAGACCATCCC 12888
Query 25812 CAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTT 25871
| | | ||| || ||||| | |||||| | || || || |||
Sbjct 12889 GTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTA 12948
Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TG 25930
| ||||||||| | || ||||| | || || ||||| || ||| || ||||| ||
Sbjct 12949 CGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTG 13008
Query 25931 CGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGC 25990
| | ||||| ||||| ||| || || |||||| || || ||| || |||||||
Sbjct 13009 C-TCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGC 13067
Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033
|||| || | || ||||| | |||| || ||||| |||||
Sbjct 13068 TCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCT 13110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928737019171520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |