Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq69 127 4e-24 >seq69 Length=63067 Score = 127 bits (140), Expect = 4e-24 Identities = 310/463 (67%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 25576 GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAAC 25635 |||| || ||| ||||| | ||| | || |||||||||||| |||||| || |||||| Sbjct 12653 GAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAAC 12712 Query 25636 GAGAATCTGTGCGAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTA 25694 ||||||||| | || || | || ||||||| ||| | ||| || ||| || || Sbjct 12713 GAGAATCTGGCCATGAACTTTAGCAATGAAGTGCAAGTGC-CGGAAGCTCGGTGCTTTTA 12771 Query 25695 CGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT--- 25751 || |||||||| || || ||||| | ||||| || || ||| | ||| || || Sbjct 12772 TGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTC---GCTGCTCATTGA 12828 Query 25752 GACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACC 25811 |||||||||| ||| | | |||| |||| || | | || || ||| ||| || Sbjct 12829 CACGTACATTAAAGAGGCGACGGAGAAGGATCACCTTCTGCGCGCGATTGAGACCATCCC 12888 Query 25812 CAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTT 25871 | | | ||| || ||||| | |||||| | || || || ||| Sbjct 12889 GTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTA 12948 Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TG 25930 | ||||||||| | || ||||| | || || ||||| || ||| || ||||| || Sbjct 12949 CGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTG 13008 Query 25931 CGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGC 25990 | | ||||| ||||| ||| || || |||||| || || ||| || ||||||| Sbjct 13009 C-TCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGC 13067 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 |||| || | || ||||| | |||| || ||||| ||||| Sbjct 13068 TCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCT 13110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928737019171520