Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq1773 84.2 1e-11 >seq1773 Length=8977 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422 |||||||| |||||||||| || || || | ||||| | || ||||| | || || | Sbjct 8759 ATATGATTGCTGTAAATATGCGCATCGCCCAGCGTGTGCACAAAATCTCCGAGTTGCAAT 8700 Query 78423 CCGCACAAATGCGCAATAAT-ATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAAT 78481 ||||| | || || | || ||| || | || |||||||||||||| || || || | Sbjct 8699 CCGCAAACCTGTGCCACCATCATG-GTCAACAAGGCGTATGAAGCAATATTGAAAGGCAC 8641 Query 78482 TCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541 || | ||| | ||| | || || |||||||| ||||| | || |||| | | Sbjct 8640 GCCCAGGAAAATATCAGCACTGCGCTGGTACAACTGGCATGACAATTTGCCAT---CGGC 8584 Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAG 78577 || |||||||| || | || || |||||||| || Sbjct 8583 AACATAAAACTGAAAAAAAGCATGGCAAGGCGGAAG 8548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300126040929400