Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019515.1
Length=93839
Score E
Sequences producing significant alignments: (Bits) Value
seq1773 84.2 1e-11
>seq1773
Length=8977
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/216 (69%), Gaps = 5/216 (2%)
Strand=Plus/Minus
Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422
|||||||| |||||||||| || || || | ||||| | || ||||| | || || |
Sbjct 8759 ATATGATTGCTGTAAATATGCGCATCGCCCAGCGTGTGCACAAAATCTCCGAGTTGCAAT 8700
Query 78423 CCGCACAAATGCGCAATAAT-ATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAAT 78481
||||| | || || | || ||| || | || |||||||||||||| || || || |
Sbjct 8699 CCGCAAACCTGTGCCACCATCATG-GTCAACAAGGCGTATGAAGCAATATTGAAAGGCAC 8641
Query 78482 TCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541
|| | ||| | ||| | || || |||||||| ||||| | || |||| | |
Sbjct 8640 GCCCAGGAAAATATCAGCACTGCGCTGGTACAACTGGCATGACAATTTGCCAT---CGGC 8584
Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAG 78577
|| |||||||| || | || || |||||||| ||
Sbjct 8583 AACATAAAACTGAAAAAAAGCATGGCAAGGCGGAAG 8548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300126040929400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |