Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019909.1
Length=168809
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 134 1e-26
>seq2003
Length=7520
Score = 134 bits (148), Expect = 1e-26
Identities = 287/423 (68%), Gaps = 8/423 (2%)
Strand=Plus/Minus
Query 146553 CATGAGGTCGTTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACC 146612
||| ||| ||| || || || |||||||| || || || | ||||||||| || || ||
Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034
Query 146613 TTTATTGTTCTTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAA 146672
||||| ||||| || ||||| ||| |||||||| ||||| | ||| || ||||
Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974
Query 146673 AGTAGCTGCACCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CTAAGTGAG 146731
|| || || || || || | ||||| || || || ||||| || | || || ||
Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914
Query 146732 TTTTCCAGAATGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTT 146791
||| |||| || | || ||||| | |||| || | | |||| ||
Sbjct 6913 TTTGT-AGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCC-- 6857
Query 146792 CAGCACG---ATACATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGA 146848
|||| || || | || || || || || || ||||| |||| || ||| || |
Sbjct 6856 CAGCGCGCGGATGCGGCCC-GCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCA 6798
Query 146849 TGATTGCTTTGTTTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGC 146908
||| || || | ||| || || ||||| || || || ||| || || | ||||
Sbjct 6797 CGATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGC 6738
Query 146909 AAGAACTGAACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA 146968
| || ||||||||||| || |||||||| ||||||||||| || || |||||||| || |
Sbjct 6737 AGGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGA 6678
Query 146969 TCT 146971
|||
Sbjct 6677 TCT 6675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539998132694920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |