Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq2003 134 1e-26 >seq2003 Length=7520 Score = 134 bits (148), Expect = 1e-26 Identities = 287/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 146553 CATGAGGTCGTTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACC 146612 ||| ||| ||| || || || |||||||| || || || | ||||||||| || || || Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034 Query 146613 TTTATTGTTCTTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAA 146672 ||||| ||||| || ||||| ||| |||||||| ||||| | ||| || |||| Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974 Query 146673 AGTAGCTGCACCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CTAAGTGAG 146731 || || || || || || | ||||| || || || ||||| || | || || || Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914 Query 146732 TTTTCCAGAATGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTT 146791 ||| |||| || | || ||||| | |||| || | | |||| || Sbjct 6913 TTTGT-AGAACGGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCC-- 6857 Query 146792 CAGCACG---ATACATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGA 146848 |||| || || | || || || || || || ||||| |||| || ||| || | Sbjct 6856 CAGCGCGCGGATGCGGCCC-GCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCA 6798 Query 146849 TGATTGCTTTGTTTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGC 146908 ||| || || | ||| || || ||||| || || || ||| || || | |||| Sbjct 6797 CGATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGC 6738 Query 146909 AAGAACTGAACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA 146968 | || ||||||||||| || |||||||| ||||||||||| || || |||||||| || | Sbjct 6737 AGGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGA 6678 Query 146969 TCT 146971 ||| Sbjct 6677 TCT 6675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539998132694920