Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019910.1 Length=159624 Score E Sequences producing significant alignments: (Bits) Value seq2003 140 3e-28 >seq2003 Length=7520 Score = 140 bits (154), Expect = 3e-28 Identities = 294/429 (69%), Gaps = 12/429 (3%) Strand=Plus/Plus Query 73413 CTTCCCACCCCGATTATGGCAGGTGTTCGTACTCCTACCCGTCAGTTCAGTTCCTGTGTC 73472 || || || || || ||||| ||||| ||||||||||| || |||||||| ||||| || Sbjct 6683 CTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTA 6742 Query 73473 CTGATCAAAACTGGTGACACCCTGGACTCTATCAACGCAACGGCCAAGACCATCGTTGAC 73532 |||||| | || ||||| ||||||| ||||| ||||| ||| | ||||| | Sbjct 6743 CTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAG 6802 Query 73533 TATGTGTCCAAACGCGCAGGTATCGGCTTCGACGTCGGGGC-TATCCGTGGGATTGGCAG 73591 ||||| || ||||||| || || ||| || ||| |||| | ||||| | | | ||||| Sbjct 6803 TATGTCTCGCAACGCGCCGGCATAGGCGTCAACG-CGGGCCGCATCCGCGCGCTGGGCAG 6861 Query 73592 TCCTATTCGCGGCGGAGAGATGGTTCACACAG---GCCTGATCCCATTC-ATCAAGTATC 73647 || || ||||| || | || || | ||||| || ||| | || | | Sbjct 6862 CGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTG---CCGTTCTACAAACTGTT 6918 Query 73648 TCACTGGGGCGCTCAAGTCGTGCTCCCAGGGCGGCATTCGTGGTGGTGCGGCAACAGCGT 73707 || | ||| | || || ||||| |||||||| | || ||||| ||||| || || Sbjct 6919 CCAGT-CTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGT 6977 Query 73708 ACATCCCTCTGTGGCA-TTACCAGTTCGATGACGTCGTTGTACTGAAGAATAACCGTGGT 73766 | ||| ||||||| | ||| || || | | || ||||| || ||||| || Sbjct 6978 TCTACCCGTTGTGGCACCTTGAAGTCGAATCAC-TGCTGGTGCTGAAAAACAACCGCGGC 7036 Query 73767 ACTGAAGAGAACCGCGAACGCCGTATCGACTATGGTATTCAGATCAACCGCGTGATGTTT 73826 ||||| ||||| | || | | |||| ||||| | |||||||||||| |||||| Sbjct 7037 GTAGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTAC 7096 Query 73827 GAGCGCCTG 73835 |||||||| Sbjct 7097 CAGCGCCTG 7105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510609543269120