Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_019910.1
Length=159624
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 140 3e-28
>seq2003
Length=7520
Score = 140 bits (154), Expect = 3e-28
Identities = 294/429 (69%), Gaps = 12/429 (3%)
Strand=Plus/Plus
Query 73413 CTTCCCACCCCGATTATGGCAGGTGTTCGTACTCCTACCCGTCAGTTCAGTTCCTGTGTC 73472
|| || || || || ||||| ||||| ||||||||||| || |||||||| ||||| ||
Sbjct 6683 CTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTA 6742
Query 73473 CTGATCAAAACTGGTGACACCCTGGACTCTATCAACGCAACGGCCAAGACCATCGTTGAC 73532
|||||| | || ||||| ||||||| ||||| ||||| ||| | ||||| |
Sbjct 6743 CTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAG 6802
Query 73533 TATGTGTCCAAACGCGCAGGTATCGGCTTCGACGTCGGGGC-TATCCGTGGGATTGGCAG 73591
||||| || ||||||| || || ||| || ||| |||| | ||||| | | | |||||
Sbjct 6803 TATGTCTCGCAACGCGCCGGCATAGGCGTCAACG-CGGGCCGCATCCGCGCGCTGGGCAG 6861
Query 73592 TCCTATTCGCGGCGGAGAGATGGTTCACACAG---GCCTGATCCCATTC-ATCAAGTATC 73647
|| || ||||| || | || || | ||||| || ||| | || | |
Sbjct 6862 CGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTG---CCGTTCTACAAACTGTT 6918
Query 73648 TCACTGGGGCGCTCAAGTCGTGCTCCCAGGGCGGCATTCGTGGTGGTGCGGCAACAGCGT 73707
|| | ||| | || || ||||| |||||||| | || ||||| ||||| || ||
Sbjct 6919 CCAGT-CTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGT 6977
Query 73708 ACATCCCTCTGTGGCA-TTACCAGTTCGATGACGTCGTTGTACTGAAGAATAACCGTGGT 73766
| ||| ||||||| | ||| || || | | || ||||| || ||||| ||
Sbjct 6978 TCTACCCGTTGTGGCACCTTGAAGTCGAATCAC-TGCTGGTGCTGAAAAACAACCGCGGC 7036
Query 73767 ACTGAAGAGAACCGCGAACGCCGTATCGACTATGGTATTCAGATCAACCGCGTGATGTTT 73826
||||| ||||| | || | | |||| ||||| | |||||||||||| ||||||
Sbjct 7037 GTAGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTAC 7096
Query 73827 GAGCGCCTG 73835
||||||||
Sbjct 7097 CAGCGCCTG 7105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510609543269120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |