Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_019925.1 Length=152427 Score E Sequences producing significant alignments: (Bits) Value seq2003 140 3e-28 >seq2003 Length=7520 Score = 140 bits (154), Expect = 3e-28 Identities = 294/429 (69%), Gaps = 12/429 (3%) Strand=Plus/Minus Query 51379 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATGCGACGTTCGCGGTT 51438 |||||||| |||||| |||||||||||| | || || |||| |||| | ||||| Sbjct 7105 CAGGCGCTGGTACATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTT 7046 Query 51439 CTCTTCTGTTCCACGGTTGTTCTTCAGGACAACGACGTCATCGAACTGGTAG-TGCCACA 51497 |||||| || |||||||| ||||| || | | || || ||| || ||||||| Sbjct 7045 TTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCA-GTGATTCGACTTCAAGGTGCCACA 6987 Query 51498 GGGGGATGTACCCTGTCGCTGCACCGCCGCGAATGCCGCCCTGAGAGCACGACTTGAGCG 51557 ||| | || ||||| || || || || | |||||||| ||||| || || | || Sbjct 6986 ACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCG 6927 Query 51558 CCCCAGTGAGATACTTGAT-GAACGGGATCAGGC---CTGTGTGAACCATCTCTCCGCCG 51613 | | || | | || | |||||| ||||| | || || | || ||||| Sbjct 6926 CAG-ACTGGAACAGTTTGTAGAACGG---CAGGCAACCGGTATGTTGCGCTTCGCCGCCA 6871 Query 51614 CGAATAGGACTACCAATACCACGGATT-GCCCCGAAGTCGAAACCGATACCAGCGCGTTT 51672 || || || || | | ||||| | |||| || || || || || ||||||| Sbjct 6870 CGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGC-GTTGACGCCTATGCCGGCGCGTTG 6812 Query 51673 TGACACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGT 51732 || ||||| | ||||| | ||| ||||| ||||| ||||||| ||||| || Sbjct 6811 CGAGACATACTTCACGATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACA 6752 Query 51733 CTTGATCAACACACATGAGCTGAACTGACGGGTAGGAGTACGAACACCGGCCATGATCGG 51792 || ||||| || || ||||||||||| || ||||||||||| |||||||||||||| || Sbjct 6751 CTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGG 6692 Query 51793 GGTTGGAAG 51801 || || || Sbjct 6691 CGTAGGCAG 6683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487581815659160