Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq5423 84.2 2e-11 seq5401 84.2 2e-11 >seq5423 Length=1512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39245 GGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAG 39304 ||||||| || || | | || |||||| | |||| ||| | | | || || || ||| Sbjct 1153 GGTGTGGAAATAATCAGGACTTCTTTAATGCCTGCCAGCATAAGTGCTGACAAGGGATAG 1212 Query 39305 TAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGA 39364 || |||||||||||||||||||| || |||| ||||||| ||| |||| |||||| Sbjct 1213 TAAATCATGGGTTTGTCATACACTGGCAGCAGTTGCTTGGACACCACCTGTGTCACCGGA 1272 Query 39365 TGAAGGCGGGTTCC 39378 | | |||||||| Sbjct 1273 TATAAACGGGTTCC 1286 >seq5401 Length=1517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39835 GGGATCAGCTTTTCTGGATGTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACA 39894 ||||||| |||||| ||| || ||||||||| | || |||||||||||||| ||| Sbjct 277 GGGATCAACTTTTCAGGAAAATGGTAAGGCCCATAATTGTTGGAGCAGTTGGTGGTCAAC 336 Query 39895 ACAGGCAAATCGTAGGTGCGGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGAC 39954 || ||||| | || ||| |||| |||| || | ||| || || ||||| || ||| Sbjct 337 ACTGGCAAGCCATACGTGTGGTGGTAAGCGCGTACCAAATGATCCGAGGCTGCTTTGGAC 396 Query 39955 GCACTGTACGGGCT 39968 ||| ||| ||||| Sbjct 397 GCAGAGTAAGGGCT 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472575557149960