Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq5423 84.2 2e-11
seq5401 84.2 2e-11
>seq5423
Length=1512
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 39245 GGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAG 39304
||||||| || || | | || |||||| | |||| ||| | | | || || || |||
Sbjct 1153 GGTGTGGAAATAATCAGGACTTCTTTAATGCCTGCCAGCATAAGTGCTGACAAGGGATAG 1212
Query 39305 TAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGA 39364
|| |||||||||||||||||||| || |||| ||||||| ||| |||| ||||||
Sbjct 1213 TAAATCATGGGTTTGTCATACACTGGCAGCAGTTGCTTGGACACCACCTGTGTCACCGGA 1272
Query 39365 TGAAGGCGGGTTCC 39378
| | ||||||||
Sbjct 1273 TATAAACGGGTTCC 1286
>seq5401
Length=1517
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 39835 GGGATCAGCTTTTCTGGATGTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACA 39894
||||||| |||||| ||| || ||||||||| | || |||||||||||||| |||
Sbjct 277 GGGATCAACTTTTCAGGAAAATGGTAAGGCCCATAATTGTTGGAGCAGTTGGTGGTCAAC 336
Query 39895 ACAGGCAAATCGTAGGTGCGGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGAC 39954
|| ||||| | || ||| |||| |||| || | ||| || || ||||| || |||
Sbjct 337 ACTGGCAAGCCATACGTGTGGTGGTAAGCGCGTACCAAATGATCCGAGGCTGCTTTGGAC 396
Query 39955 GCACTGTACGGGCT 39968
||| ||| |||||
Sbjct 397 GCAGAGTAAGGGCT 410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472575557149960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |