Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2003 190 2e-43 seq3915 118 1e-21 >seq2003 Length=7520 Score = 190 bits (210), Expect = 2e-43 Identities = 314/453 (69%), Gaps = 0/453 (0%) Strand=Plus/Plus Query 40454 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 40513 || || || || || || ||||| ||||| ||||||||||||||||||||| | || Sbjct 6680 TCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGC 6739 Query 40514 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCGATCGTG 40573 ||| | || || | | ||| || | | || || ||| ||||||||| Sbjct 6740 GTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTG 6799 Query 40574 AAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGT 40633 |||||| | || ||||| || || || || || |||||||| | || ||||| |||| Sbjct 6800 AAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGC 6859 Query 40634 TCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATT 40693 | || ||||| || ||||| ||||| ||| | || |||| |||| | Sbjct 6860 AGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTC 6919 Query 40694 CAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTAT 40753 || | || || |||||||| || ||||| || || || ||||| || || || ||| Sbjct 6920 CAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTC 6979 Query 40754 TATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTA 40813 || || || ||||| || ||||| ||| || |||||| |||| |||||| |||||| Sbjct 6980 TACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTA 7039 Query 40814 GAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTATAAA 40873 ||||||||||| || |||||||| |||||||| || ||| | |||| ||||||| | Sbjct 7040 GAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCAG 7099 Query 40874 CGCTTAATGAATCGTGATTACATTACGCTGTTT 40906 ||| | || || | | |||| || |||||| Sbjct 7100 CGCCTGATCAAGGGCCAGAACATCACTCTGTTT 7132 >seq3915 Length=2367 Score = 118 bits (130), Expect = 1e-21 Identities = 246/363 (68%), Gaps = 4/363 (1%) Strand=Plus/Minus Query 42205 TGTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCT 42264 ||| || || ||||| |||||| | || ||||| | |||| | ||||| || Sbjct 1015 TGTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACT 956 Query 42265 TTCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAA 42324 || |||||||||||||| |||||||||||| |||| ||||| | ||| | Sbjct 955 CTCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGG 896 Query 42325 ACTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGA 42384 || || || |||||||| |||||| ||||| ||||||| || ||| | || Sbjct 895 CCTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGGA 836 Query 42385 TACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG--TGAGC 42442 | |||| ||||| ||| | |||||| | || || ||||| | | | | || |||| Sbjct 835 TTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGGTGT-CATTGCCCGAGC 777 Query 42443 ATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACG 42502 |||||||||||||||| || ||||||||| || ||||| ||| || ||||| Sbjct 776 -TGGAAACCTGGATCGAGACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCATACACC 718 Query 42503 CATATTCAACGTAACTTGCACATTGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAAT 42562 || || || || | || ||| |||||||| ||| || | ||| | |||||| Sbjct 717 CACATCATCCGCAATATCGTCAATGACCCTTCTGTCATGTTTGATGACATCGTGCGCAAT 658 Query 42563 GAA 42565 ||| Sbjct 657 GAA 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557928851817640