Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020080.1
Length=174413
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 190 2e-43
seq3915 118 1e-21
>seq2003
Length=7520
Score = 190 bits (210), Expect = 2e-43
Identities = 314/453 (69%), Gaps = 0/453 (0%)
Strand=Plus/Plus
Query 40454 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 40513
|| || || || || || ||||| ||||| ||||||||||||||||||||| | ||
Sbjct 6680 TCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGC 6739
Query 40514 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCGATCGTG 40573
||| | || || | | ||| || | | || || ||| |||||||||
Sbjct 6740 GTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTG 6799
Query 40574 AAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGT 40633
|||||| | || ||||| || || || || || |||||||| | || ||||| ||||
Sbjct 6800 AAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGC 6859
Query 40634 TCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATT 40693
| || ||||| || ||||| ||||| ||| | || |||| |||| |
Sbjct 6860 AGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTC 6919
Query 40694 CAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTAT 40753
|| | || || |||||||| || ||||| || || || ||||| || || || |||
Sbjct 6920 CAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTC 6979
Query 40754 TATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTA 40813
|| || || ||||| || ||||| ||| || |||||| |||| |||||| ||||||
Sbjct 6980 TACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTA 7039
Query 40814 GAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTATAAA 40873
||||||||||| || |||||||| |||||||| || ||| | |||| ||||||| |
Sbjct 7040 GAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATGTACCAG 7099
Query 40874 CGCTTAATGAATCGTGATTACATTACGCTGTTT 40906
||| | || || | | |||| || ||||||
Sbjct 7100 CGCCTGATCAAGGGCCAGAACATCACTCTGTTT 7132
>seq3915
Length=2367
Score = 118 bits (130), Expect = 1e-21
Identities = 246/363 (68%), Gaps = 4/363 (1%)
Strand=Plus/Minus
Query 42205 TGTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCT 42264
||| || || ||||| |||||| | || ||||| | |||| | ||||| ||
Sbjct 1015 TGTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACT 956
Query 42265 TTCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAA 42324
|| |||||||||||||| |||||||||||| |||| ||||| | ||| |
Sbjct 955 CTCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGG 896
Query 42325 ACTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGA 42384
|| || || |||||||| |||||| ||||| ||||||| || ||| | ||
Sbjct 895 CCTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGGA 836
Query 42385 TACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG--TGAGC 42442
| |||| ||||| ||| | |||||| | || || ||||| | | | | || ||||
Sbjct 835 TTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGGTGT-CATTGCCCGAGC 777
Query 42443 ATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACG 42502
|||||||||||||||| || ||||||||| || ||||| ||| || |||||
Sbjct 776 -TGGAAACCTGGATCGAGACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCATACACC 718
Query 42503 CATATTCAACGTAACTTGCACATTGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAAT 42562
|| || || || | || ||| |||||||| ||| || | ||| | ||||||
Sbjct 717 CACATCATCCGCAATATCGTCAATGACCCTTCTGTCATGTTTGATGACATCGTGCGCAAT 658
Query 42563 GAA 42565
|||
Sbjct 657 GAA 655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557928851817640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |