Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq2003 98.7 1e-15 >seq2003 Length=7520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 301/457 (66%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 106057 CTGCCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGTG 106116 ||||| || || |||||||| || || ||||| | ||| || |||||||||||||| || Sbjct 6683 CTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTA 6742 Query 106117 CTGATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGAC 106176 |||||| | | |||| |||||| ||||| || | | || ||||| | Sbjct 6743 CTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAG 6802 Query 106177 TATGTC-AGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTGC 106235 |||||| |||| ||||| ||||| || | ||| ||| || || || || || Sbjct 6803 TATGTCTCGCAA-CGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAG 6861 Query 106236 TCCTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC-- 106293 || |||||||| || | | |||||||| | || ||| ||| |||| Sbjct 6862 CGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCA 6921 Query 106294 GTCGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTAC 106353 ||| || |||| |||||| ||||| || || || || || | ||| | | Sbjct 6922 GTC--TGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTC 6979 Query 106354 TATCCGATGTGGCACCTGCAGTTCCCAGCCATGATTGTTCTGAAGAATAACCGTGGCACT 106413 || ||| |||||||||| | || | | || | || ||||| || ||||| ||| Sbjct 6980 TACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTA 7039 Query 106414 GAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATCAACCGTGTCATGATGGAA 106473 || | ||||| | || | |||||||| |||||||||||||| | ||||| | Sbjct 7040 GAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCG---CCTGATGTAC 7096 Query 106474 C-GCGCCTGGAACAA---ACAGAACATCTACCTGTTT 106506 | |||||| || ||| ||||||||| |||||| Sbjct 7097 CAGCGCCT-GATCAAGGGCCAGAACATCACTCTGTTT 7132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504882207931920