Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020083.1
Length=157834
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 98.7 1e-15
>seq2003
Length=7520
Score = 98.7 bits (108), Expect = 1e-15
Identities = 301/457 (66%), Gaps = 14/457 (3%)
Strand=Plus/Plus
Query 106057 CTGCCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGTG 106116
||||| || || |||||||| || || ||||| | ||| || |||||||||||||| ||
Sbjct 6683 CTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTA 6742
Query 106117 CTGATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGAC 106176
|||||| | | |||| |||||| ||||| || | | || ||||| |
Sbjct 6743 CTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCGATCGTGAAG 6802
Query 106177 TATGTC-AGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTGC 106235
|||||| |||| ||||| ||||| || | ||| ||| || || || || ||
Sbjct 6803 TATGTCTCGCAA-CGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAG 6861
Query 106236 TCCTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC-- 106293
|| |||||||| || | | |||||||| | || ||| ||| ||||
Sbjct 6862 CGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCA 6921
Query 106294 GTCGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTAC 106353
||| || |||| |||||| ||||| || || || || || | ||| | |
Sbjct 6922 GTC--TGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTC 6979
Query 106354 TATCCGATGTGGCACCTGCAGTTCCCAGCCATGATTGTTCTGAAGAATAACCGTGGCACT 106413
|| ||| |||||||||| | || | | || | || ||||| || ||||| |||
Sbjct 6980 TACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGCGGCGTA 7039
Query 106414 GAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATCAACCGTGTCATGATGGAA 106473
|| | ||||| | || | |||||||| |||||||||||||| | ||||| |
Sbjct 7040 GAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCG---CCTGATGTAC 7096
Query 106474 C-GCGCCTGGAACAA---ACAGAACATCTACCTGTTT 106506
| |||||| || ||| ||||||||| ||||||
Sbjct 7097 CAGCGCCT-GATCAAGGGCCAGAACATCACTCTGTTT 7132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504882207931920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |