Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq3915 158 1e-33 seq2003 93.3 4e-14 >seq3915 Length=2367 Score = 158 bits (174), Expect = 1e-33 Identities = 213/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 76461 AACGCCCAAGTCTCTACCCATGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAACT 76520 |||||||| ||||| | ||| |||||||| || || || | ||||| | | Sbjct 749 AACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGGCAATGACACCAGCGGCAACAAGGCC 808 Query 76521 GCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGATG 76580 |||| || | ||||||||| | |||||||| || |||| |||||||||||||||||| Sbjct 809 ACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGATG 868 Query 76581 AAGATGTGCTTCTCGTGATCCGGCAGGTTCATG-TAGTCGATTCGGTCACGGGTCACGTT 76639 || || ||||| || || || |||||| | || ||||| ||||| | | ||| | Sbjct 869 AAAATATGCTTTTCATGCTCGGGCAGG-CCTTGATAGTCAGCGCGGTCTTGCGACACATC 927 Query 76640 AACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCGC 76699 |||||||| || ||||||||||| | ||||| || || ||||||||||||||| || Sbjct 928 GACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACACCGG 987 Query 76700 ATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGG 76753 || |||||| ||||| || || | || || | || |||| |||||| || Sbjct 988 ATATTTCTGTTGGTCATACCGCGCCACATTGACGGGCTGGCCGAAGAACATGGG 1041 Score = 116 bits (128), Expect = 3e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 75117 TTCAGCATATACTGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATA 75176 |||||||| | ||||||||||| | |||| |||||| ||||| ||||| || ||| Sbjct 338 TTCAGCATGTGCTGGGTGCCGGTGAGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATG 397 Query 75177 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTC 75236 || |||| ||||| ||| ||| |||||| | || ||||| |||||||||||||| Sbjct 398 ATCTTGGCATTGCCTTCCATCACCTTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTG 457 Query 75237 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATGTTGTGAAGGCACAGGTACAGC 75290 ||||| |||||||| ||||| || |||| ||| ||||| |||| ||| Sbjct 458 ACGTAAAAGCGGATGGCTTCGAGGATATTGACGTTCATCAGGCAGCGGTAGAGC 511 Score = 107 bits (118), Expect = 2e-18 Identities = 190/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 77776 CACGAGGGGGCTCGAATCCGTTGGTGGAGTTGGTGATTTGGCTGGATGTCTCGCAAGGCA 77835 |||| || ||||||| |||||||||| ||||| ||| |||||||| ||||| |||||| Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946 Query 77836 TCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATGGCGATGTCGATACGCAGCTTTT 77895 ||| || || ||| ||||||||||||| ||||| | || ||| ||||| ||| Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006 Query 77896 CCCAATCCATCTTCAGTTCCGCAGTGTGGAGTCCATCCACTTCTTTCTTGTAACGGTCGA 77955 |||| || | | || | | | || || | || | ||||| ||||| | || | Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066 Query 77956 TCGGTAGAATACCCTGAGAGTAGGTGGTCTCGTGGAAGAGATCACATTTACCCAGTTCTT 78015 |||| | ||| || | | |||||| || |||| || | ||||| || | ||| Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126 Query 78016 TTGCCAGGTCAACCGATGCTTCCAGCAGGTAATACTG 78052 | | | || || |||| |||||||||||||| Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTG 2163 >seq2003 Length=7520 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 79391 ACACAGGTTGGACTGTTTCACCGGAGCCTGTTCTGGGTCAAACGGGCTGTTAGTGTTGCA 79450 ||||||||||||||| |||||| ||| | || ||||||||||||| |||||||| Sbjct 7381 ACACAGGTTGGACTGACGCACCGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCA 7322 Query 79451 GTGGTCAACGTGCTGCACGTAAATACGGCCCGTCTGTGAACGCTCTTGC 79499 ||||||||||| ||| | ||| |||||||| || | |||||| ||| Sbjct 7321 GTGGTCAACGTTCTGGATGTAGATACGGCCGGTACCGGCACGCTCCTGC 7273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455335957822120