Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020201.1
Length=142349
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 158 1e-33
seq2003 93.3 4e-14
>seq3915
Length=2367
Score = 158 bits (174), Expect = 1e-33
Identities = 213/294 (72%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 76461 AACGCCCAAGTCTCTACCCATGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAACT 76520
|||||||| ||||| | ||| |||||||| || || || | ||||| | |
Sbjct 749 AACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGGCAATGACACCAGCGGCAACAAGGCC 808
Query 76521 GCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGATG 76580
|||| || | ||||||||| | |||||||| || |||| ||||||||||||||||||
Sbjct 809 ACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGATG 868
Query 76581 AAGATGTGCTTCTCGTGATCCGGCAGGTTCATG-TAGTCGATTCGGTCACGGGTCACGTT 76639
|| || ||||| || || || |||||| | || ||||| ||||| | | ||| |
Sbjct 869 AAAATATGCTTTTCATGCTCGGGCAGG-CCTTGATAGTCAGCGCGGTCTTGCGACACATC 927
Query 76640 AACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCGC 76699
|||||||| || ||||||||||| | ||||| || || ||||||||||||||| ||
Sbjct 928 GACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACACCGG 987
Query 76700 ATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGG 76753
|| |||||| ||||| || || | || || | || |||| |||||| ||
Sbjct 988 ATATTTCTGTTGGTCATACCGCGCCACATTGACGGGCTGGCCGAAGAACATGGG 1041
Score = 116 bits (128), Expect = 3e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 75117 TTCAGCATATACTGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATA 75176
|||||||| | ||||||||||| | |||| |||||| ||||| ||||| || |||
Sbjct 338 TTCAGCATGTGCTGGGTGCCGGTGAGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATG 397
Query 75177 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTC 75236
|| |||| ||||| ||| ||| |||||| | || ||||| ||||||||||||||
Sbjct 398 ATCTTGGCATTGCCTTCCATCACCTTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTG 457
Query 75237 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATGTTGTGAAGGCACAGGTACAGC 75290
||||| |||||||| ||||| || |||| ||| ||||| |||| |||
Sbjct 458 ACGTAAAAGCGGATGGCTTCGAGGATATTGACGTTCATCAGGCAGCGGTAGAGC 511
Score = 107 bits (118), Expect = 2e-18
Identities = 190/277 (69%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 77776 CACGAGGGGGCTCGAATCCGTTGGTGGAGTTGGTGATTTGGCTGGATGTCTCGCAAGGCA 77835
|||| || ||||||| |||||||||| ||||| ||| |||||||| ||||| ||||||
Sbjct 1887 CACGCGGTGGCTCGATACCGTTGGTGGCGTTGGCGATCTGGCTGGACGTCTCTGAAGGCA 1946
Query 77836 TCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATGGCGATGTCGATACGCAGCTTTT 77895
||| || || ||| ||||||||||||| ||||| | || ||| ||||| |||
Sbjct 1947 TCAGCGCGGTCAGGGTGGAGTTACGCAAGCCATCTTTCTGAATCTCGGCGCGCAGGCTTT 2006
Query 77896 CCCAATCCATCTTCAGTTCCGCAGTGTGGAGTCCATCCACTTCTTTCTTGTAACGGTCGA 77955
|||| || | | || | | | || || | || | ||||| ||||| | || |
Sbjct 2007 CCCAGTCGAGCAGCAATGGCTCGTTGCAGACGGCGTCGAGGTCTTTTTTGTAGCTATCAA 2066
Query 77956 TCGGTAGAATACCCTGAGAGTAGGTGGTCTCGTGGAAGAGATCACATTTACCCAGTTCTT 78015
|||| | ||| || | | |||||| || |||| || | ||||| || | |||
Sbjct 2067 TCGGCAAAATGCCTTTGGCGTAGGTAGTTTCGTTAAACGCACCACATGGGCCAAATTCGC 2126
Query 78016 TTGCCAGGTCAACCGATGCTTCCAGCAGGTAATACTG 78052
| | | || || |||| ||||||||||||||
Sbjct 2127 GGGATAACTGCACTGAGGCTTTGAGCAGGTAATACTG 2163
>seq2003
Length=7520
Score = 93.3 bits (102), Expect = 4e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 79391 ACACAGGTTGGACTGTTTCACCGGAGCCTGTTCTGGGTCAAACGGGCTGTTAGTGTTGCA 79450
||||||||||||||| |||||| ||| | || ||||||||||||| ||||||||
Sbjct 7381 ACACAGGTTGGACTGACGCACCGGCGCCACGGCAGGATCAAACGGGCTGTGCGTGTTGCA 7322
Query 79451 GTGGTCAACGTGCTGCACGTAAATACGGCCCGTCTGTGAACGCTCTTGC 79499
||||||||||| ||| | ||| |||||||| || | |||||| |||
Sbjct 7321 GTGGTCAACGTTCTGGATGTAGATACGGCCGGTACCGGCACGCTCCTGC 7273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 455335957822120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |