Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq179 150 9e-32
>seq179
Length=46302
Score = 150 bits (166), Expect = 9e-32
Identities = 321/474 (68%), Gaps = 4/474 (1%)
Strand=Plus/Plus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
|||||||||||| ||| ||| | | ||||| || || | ||| |||| ||| ||
Sbjct 21725 ATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGAATAGATCGGG 21784
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
| ||||| ||| | || || || | ||| | ||| || || ||||| ||
Sbjct 21785 TACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCATGATTTTTCCG 21844
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| ||| | || ||||| | |||| |||||| ||||| || ||||| ||||| ||
Sbjct 21845 CAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCC 21904
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
||| | ||| || ||||||||||| ||||||| ||| || ||||| || || | |||
Sbjct 21905 TTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCAT 21964
Query 26128 TGGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTG-GATCCTGTCGATCTA 26185
|| | |||||| ||| ||| | || || |||| | || | | || | || | |
Sbjct 21965 GGGGA-TAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC-GTGGCCCGG 22022
Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245
|||| ||| | ||| || || || || |||||||| ||||| ||||| | |
Sbjct 22023 ATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCACATTGTTTC 22082
Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305
| ||||| | ||||||| ||| |||| ||||||| | |||||||| || |||||
Sbjct 22083 AAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGCACGAAGAC 22142
Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359
||||| | ||| || || | |||||| | ||||| || ||||| ||| ||
Sbjct 22143 AATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAAAA 22196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253011371924225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |