Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq179 150 9e-32 >seq179 Length=46302 Score = 150 bits (166), Expect = 9e-32 Identities = 321/474 (68%), Gaps = 4/474 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||||||||| ||| ||| | | ||||| || || | ||| |||| ||| || Sbjct 21725 ATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGAATAGATCGGG 21784 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | ||||| ||| | || || || | ||| | ||| || || ||||| || Sbjct 21785 TACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCATGATTTTTCCG 21844 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| | || ||||| | |||| |||||| ||||| || ||||| ||||| || Sbjct 21845 CAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCC 21904 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||| | ||| || ||||||||||| ||||||| ||| || ||||| || || | ||| Sbjct 21905 TTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCAT 21964 Query 26128 TGGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTG-GATCCTGTCGATCTA 26185 || | |||||| ||| ||| | || || |||| | || | | || | || | | Sbjct 21965 GGGGA-TAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC-GTGGCCCGG 22022 Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 |||| ||| | ||| || || || || |||||||| ||||| ||||| | | Sbjct 22023 ATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCACATTGTTTC 22082 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||||| | ||||||| ||| |||| ||||||| | |||||||| || ||||| Sbjct 22083 AAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGCACGAAGAC 22142 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 ||||| | ||| || || | |||||| | ||||| || ||||| ||| || Sbjct 22143 AATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAAAA 22196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253011371924225