Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4549 149 7e-31 >seq4549 Length=1887 Score = 149 bits (164), Expect = 7e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 ||||||| || | || ||||| ||||| ||||| |||||||||||||| ||||| | || Sbjct 258 CAATAGGTCCCATACCCGGACCACCACCACCATGAGGAATACAGAATGTTTTATGCAGAT 199 Query 138247 TTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTT 138305 | || || ||||| || ||||| |||| | || | || ||||||||||||||| Sbjct 198 TAAGGTGGCATACGTCAGCACCGATAGATGCC-GGAGAAGTTAAACCTACCTGTGCATTC 140 Query 138306 AGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGT 138365 | ||| |||||||| | ||| || || || ||||||| ||||| |||| ||| || | | Sbjct 139 ATATTAGCACCATCCATATAAACTTGCCCGCCATTGTTATGAATAATCTCACAGATTTCT 80 Query 138366 CTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 |||| | |||||| ||||| || || |||||||| ||| ||| | ||| || Sbjct 79 TTGATTGATTCTTCAAAAACACCGTGTGTTGATGGATAAGTAGCCATCAGACACGA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578931214473160