Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq69 125 9e-24 seq179 100 3e-16 seq1591 93.3 5e-14 >seq69 Length=63067 Score = 125 bits (138), Expect = 9e-24 Identities = 331/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACA-AAGTCTCGCTCCTTCGCCGAGCG 65081 ||||| || || ||||| | || |||| ||| || |||| || || | ||| ||||| Sbjct 12899 AAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCT-TCGTACGCGGAGCG 12957 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || | || ||||| | || || || || |||||||| || || |||||| | || | Sbjct 12958 GCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTT 13017 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 |||| |||||||||| ||||||||||| ||||| ||||||| || || || ||| || Sbjct 13018 TTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCG 13077 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 ||||||||| | ||| ||| |||| |||| ||| | | | || || | || Sbjct 13078 AGATGAGGGCATGCACACGGACTTTG-CGTG--CCTCATGTACTCCAAGC-TAGTGAACA 13133 Query 65262 CACTACC----GAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGT 65317 || || || ||||| | ||| | || || || ||| ||| | | || Sbjct 13134 AGCTGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGT 13193 Query 65318 TCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377 | | |||| | || || | | || || || |||||||| | | |||| | ||| Sbjct 13194 TTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGT 13253 Query 65378 ACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACG 65437 ||||||||| ||| |||| || || | | | || ||| | |||| | | Sbjct 13254 ACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAGATTTTCCATG 13313 Query 65438 CGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTG 65497 | ||||| |||||||||| ||||| | || ||| | || ||||| ||||| || | Sbjct 13314 CAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCG 13373 Query 65498 AGAAGCGAGTTGGGGACTA 65516 ||||||| || || || || Sbjct 13374 AGAAGCGTGTGGGCGAGTA 13392 >seq179 Length=46302 Score = 100 bits (110), Expect = 3e-16 Identities = 1075/1726 (62%), Gaps = 58/1726 (3%) Strand=Plus/Minus Query 75230 CGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAG 75289 || ||||| || |||||||| | |||||| ||| ||||| ||||| || Sbjct 22270 CGAGTCGCGATTGGCATCCATAAACAGGACATTATCGCTGCGTTGGAAACATATGAATTA 22211 Query 75290 ATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAG 75348 ||||| || | || | || | || || || || || || || ||||| ||||| || | Sbjct 22210 ATGTCGCAGAAGTTTTTT-ACCCATGCGACCCCGACGCTGTTTAATGCCGGTACCCCTCG 22152 Query 75349 ACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTA 75408 || || |||| ||||| | | || | || || || || || | || ||||| Sbjct 22151 CCCCCAATTGTCTTCGTGCTTTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTA 22092 Query 75409 TGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACAT 75468 || || | | | |||||| || || || ||||| || || ||||| || || Sbjct 22091 TGATACCTTGAAACAATGTGCGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTAT 22032 Query 75469 CCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTA 75527 || || | | |||| || | || || || || || ||||| || | || | Sbjct 22031 GCACAATATCCGGGCCACGAATAGCTAC-ATCCGAGGCACTAATGGCTCTTCGAACGGGA 21973 Query 75528 TTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG-- 75585 |||| || ||||||||||| ||||| | ||| || || || || |||||| | |||| Sbjct 21972 TTATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAG-GTGGCGGC 21914 Query 75586 --TCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTC 75643 ||||| || || | ||| ||||||||||||| ||||| || || | | ||||| Sbjct 21913 AAACGCAAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTT 21854 Query 75644 CTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCC 75703 || || || || || || || | ||| |||| | || | || | | Sbjct 21853 CTCGATTTGCGGAAAAATCATGGCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCG 21794 Query 75704 CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTC 75763 ||||| | || || || |||||||| ||||| || | |||| | ||| | | ||| Sbjct 21793 TTGTGGGTACCCGATCTATTCATGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTC 21734 Query 75764 TGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTAC 75823 |||||| | | || ||||| || | ||| ||| || |||||||| | | || Sbjct 21733 TGTCCAAATGAAGCTCCAGGGCTGTACGAGTACTGGGGCGACGAGTTTGAGACTTTGTAT 21674 Query 75824 ACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT-----ACCAGCCGCCGATGTTT 75878 |||||| ||| | ||||| | || | ||| | ||||| || | |||| Sbjct 21673 GAAAAGTACGAACAAGAGGGACGGGCGAGGAAGACGATCAATGCCCAGCAGCTGTGGTTT 21614 Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938 || || | | | |||| || || ||| || | |||||| || ||||||| Sbjct 21613 -----GCGATCTTGGATGCGCAGATTGAAACGGGAGTGCCCTTTATGCTCTATAAGGATG 21559 Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998 | ||| || ||||| |||| | || || ||| | | || | ||| Sbjct 21558 CAGTGAACCGCAAATCGAACCAGCAGAACCTTGGCACGATCCGGTCCAGTAACTTGTGCT 21499 Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058 ||| | | |||| ||| |||||| ||| || || |||||||| || | | Sbjct 21498 GTGAAGTGATGGAGTTCACGTCGCCGGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAG 21439 Query 76059 CCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAA 76118 | || || |||| ||| |||||| || ||| |||| | || || | || Sbjct 21438 CGCTGCCCAAGTTTGT---TGAAGA---CGGCGTGTTTAATTACAAGAAGCTGTACGACG 21385 Query 76119 TCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG 76178 | || | | || || || || ||| || ||||| |||| || ||||||| Sbjct 21384 TGACCAGCGTCGTGACGCGTAACCTGAACAAGGTGATTGAGGTGAATTACTACCCCGTTG 21325 Query 76179 -AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTC 76237 ||| || || | ||| || ||||| ||| | || | || | ||||| || |||||| Sbjct 21324 CAGA-AGCTCGCACGTCCAACATGCGCCACCGTCCAGTCGGCATTGGTGTCCAGGGTCTC 21266 Query 76238 GCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAAT 76297 ||||||| |||||| | |||||| ||||| || |||| |||| ||||| Sbjct 21265 GCGGATGCGTTTATTCTCATGAACTACGCGTTTGAAAGCGAGCAAGCGCGGGAGCTGAAT 21206 Query 76298 GCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG-AGTTGTGAATTGGCTGA 76356 ||||| || || || || |||| || || || || | || |||| | | Sbjct 21205 AAGAACATCTTCGAGACGATCTACTACGCTTCGATGAAGACGTCGATGGAGATTGCC--A 21148 Query 76357 AGCCCAAGGTTCC-TATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT-CAG 76414 || || ||| || ||||| || |||| ||||| ||| ||||||| ||| ||| Sbjct 21147 AGGAATTGGGTCCGTACGAGACGTTCCAGGGCTCTCCAGCG-AGCAAGGGGATCTTCCAG 21089 Query 76415 TTTGATATGTGGGAAGGTGAAACCAAGCTCA----ACTACGACTGGGATGTTCTCAAG-- 76468 || || ||||||| || | || ||| | |||||| | | ||| Sbjct 21088 TTCGACATGTGGG-GCGTCACGCCGTCGTCAGGTCTTTGGGACTGGACGGAGTTGAAGGA 21030 Query 76469 GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 76527 ||||| |||| || | || |||| ||| ||| | |||| |||||||| || || Sbjct 21029 GAACGTGATCA---AGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGC 20973 Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 || || || || || |||| || || || | |||| || ||||| | || || || Sbjct 20972 TTCGACGGCCCAGATTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTA 20913 Query 76588 CCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT 76647 | | | || || || |||||| ||||| |||||| |||| | || || | Sbjct 20912 CAACCGCCGCGTGCTGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATT 20853 Query 76648 CAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTC 76707 | | | || ||||| | || | | | || |||| | ||||| || Sbjct 20852 GATTGACCTGGGCATCTGGACGCCCGAAGTCCGCAACCAAATTCTGAACGACGGTGGCTC 20793 Query 76708 CATTCAAAATATCTCAGA-TATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGG 76766 | | ||||| | | ||| ||||| ||||| ||||| | ||| |||||||||| Sbjct 20792 CGTGCAAAAGGT-TAAGACCATCCCGAATGATGTCAAGGAAAAGTACAAGACAGTGTGGG 20734 Query 76767 AAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAA 76825 |||| ||| ||| || | || | | || |||||||| ||| | |||| || Sbjct 20733 AAATTAAGCAGAAGTCGATCTTGGATCTCTCGGCTGATCGTGG-CGCGTACATTTGCCAG 20675 Query 76826 AGTCAAAGTATGAATCTATTCAT-----GGAAAGTCCAACGATGTCCAAGCTCTCTTCTA 76880 || || | || ||||||| ||| ||| ||||| ||||| | || | Sbjct 20674 AGCCAGTCGCTCAA--TATTCATATTGCGGA---TCCGACGATCAGTAAGCTGACGTCGA 20620 Query 76881 TGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 |||| | ||||||||||| |||||||||| || || ||||| || Sbjct 20619 TGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGTATGTATTA 20574 >seq1591 Length=10447 Score = 93.3 bits (102), Expect = 5e-14 Identities = 244/370 (66%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || || ||| | || ||||| || || || ||||| |||| || || ||| Sbjct 993 CCTGGGACAGGTAAAACCTTGCTGGCCCGTGCGATTGCCGGTGAGGCAAAAGTGCCTTTC 1052 Query 175375 ATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || ||| | | | | ||||||| ||||||||||| ||||||||||| | | || Sbjct 1053 TTC-AGTATTTCAGGTTCTGACTTTGTCGAGATGTTTGTCGGTGTGGGTGCGGCACGCGT 1111 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || || | ||||||| ||| ||||| || ||||| | || || |||||||| Sbjct 1112 GCGTGACATGTTTGAAACAGCCAAGAAAAATGCGCCTTGTATCATTTTTATCGATGAGAT 1171 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 ||| || || || || || | || ||| | | || |||||| | ||||| Sbjct 1172 TGACGCTGTAGGTCGTCATCGTGGTGCAGGTACTGGTGGTGGTAACGACGAGCGTGAACA 1231 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 |||| | || || | | ||||||||||| ||||| | | | ||| | | || Sbjct 1232 AACATTGAACCAGATGTTGGTGGAGATGGATGGTTTTGAGGCTAACTCCGGCGTGATTGT 1291 Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTT 175673 || || || || || || | ||| | || ||| | ||| | | || || || ||||| Sbjct 1292 GATCGCTGCAACCAACCGTGCTGATGTGCTGGATAAAGCCTTGTTGCGTCCTGGCCGTTT 1351 Query 175674 TGATCGCAAG 175683 ||| ||| || Sbjct 1352 TGACCGCCAG 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596500375555040