Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq69 125 9e-24
seq179 100 3e-16
seq1591 93.3 5e-14
>seq69
Length=63067
Score = 125 bits (138), Expect = 9e-24
Identities = 331/499 (66%), Gaps = 10/499 (2%)
Strand=Plus/Plus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACA-AAGTCTCGCTCCTTCGCCGAGCG 65081
||||| || || ||||| | || |||| ||| || |||| || || | ||| |||||
Sbjct 12899 AAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCT-TCGTACGCGGAGCG 12957
Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141
|| | || ||||| | || || || || |||||||| || || |||||| | || |
Sbjct 12958 GCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTT 13017
Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201
|||| |||||||||| ||||||||||| ||||| ||||||| || || || ||| ||
Sbjct 13018 TTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCG 13077
Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261
||||||||| | ||| ||| |||| |||| ||| | | | || || | ||
Sbjct 13078 AGATGAGGGCATGCACACGGACTTTG-CGTG--CCTCATGTACTCCAAGC-TAGTGAACA 13133
Query 65262 CACTACC----GAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGT 65317
|| || || ||||| | ||| | || || || ||| ||| | | ||
Sbjct 13134 AGCTGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGT 13193
Query 65318 TCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377
| | |||| | || || | | || || || |||||||| | | |||| | |||
Sbjct 13194 TTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGT 13253
Query 65378 ACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACG 65437
||||||||| ||| |||| || || | | | || ||| | |||| | |
Sbjct 13254 ACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAGATTTTCCATG 13313
Query 65438 CGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTG 65497
| ||||| |||||||||| ||||| | || ||| | || ||||| ||||| || |
Sbjct 13314 CAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCG 13373
Query 65498 AGAAGCGAGTTGGGGACTA 65516
||||||| || || || ||
Sbjct 13374 AGAAGCGTGTGGGCGAGTA 13392
>seq179
Length=46302
Score = 100 bits (110), Expect = 3e-16
Identities = 1075/1726 (62%), Gaps = 58/1726 (3%)
Strand=Plus/Minus
Query 75230 CGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAG 75289
|| ||||| || |||||||| | |||||| ||| ||||| ||||| ||
Sbjct 22270 CGAGTCGCGATTGGCATCCATAAACAGGACATTATCGCTGCGTTGGAAACATATGAATTA 22211
Query 75290 ATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAG 75348
||||| || | || | || | || || || || || || || ||||| ||||| || |
Sbjct 22210 ATGTCGCAGAAGTTTTTT-ACCCATGCGACCCCGACGCTGTTTAATGCCGGTACCCCTCG 22152
Query 75349 ACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTA 75408
|| || |||| ||||| | | || | || || || || || | || |||||
Sbjct 22151 CCCCCAATTGTCTTCGTGCTTTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTA 22092
Query 75409 TGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACAT 75468
|| || | | | |||||| || || || ||||| || || ||||| || ||
Sbjct 22091 TGATACCTTGAAACAATGTGCGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTAT 22032
Query 75469 CCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTA 75527
|| || | | |||| || | || || || || || ||||| || | || |
Sbjct 22031 GCACAATATCCGGGCCACGAATAGCTAC-ATCCGAGGCACTAATGGCTCTTCGAACGGGA 21973
Query 75528 TTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG-- 75585
|||| || ||||||||||| ||||| | ||| || || || || |||||| | ||||
Sbjct 21972 TTATCCCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAG-GTGGCGGC 21914
Query 75586 --TCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTC 75643
||||| || || | ||| ||||||||||||| ||||| || || | | |||||
Sbjct 21913 AAACGCAAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTT 21854
Query 75644 CTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCC 75703
|| || || || || || || | ||| |||| | || | || | |
Sbjct 21853 CTCGATTTGCGGAAAAATCATGGCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCG 21794
Query 75704 CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTC 75763
||||| | || || || |||||||| ||||| || | |||| | ||| | | |||
Sbjct 21793 TTGTGGGTACCCGATCTATTCATGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTC 21734
Query 75764 TGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTAC 75823
|||||| | | || ||||| || | ||| ||| || |||||||| | | ||
Sbjct 21733 TGTCCAAATGAAGCTCCAGGGCTGTACGAGTACTGGGGCGACGAGTTTGAGACTTTGTAT 21674
Query 75824 ACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT-----ACCAGCCGCCGATGTTT 75878
|||||| ||| | ||||| | || | ||| | ||||| || | ||||
Sbjct 21673 GAAAAGTACGAACAAGAGGGACGGGCGAGGAAGACGATCAATGCCCAGCAGCTGTGGTTT 21614
Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938
|| || | | | |||| || || ||| || | |||||| || |||||||
Sbjct 21613 -----GCGATCTTGGATGCGCAGATTGAAACGGGAGTGCCCTTTATGCTCTATAAGGATG 21559
Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998
| ||| || ||||| |||| | || || ||| | | || | |||
Sbjct 21558 CAGTGAACCGCAAATCGAACCAGCAGAACCTTGGCACGATCCGGTCCAGTAACTTGTGCT 21499
Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058
||| | | |||| ||| |||||| ||| || || |||||||| || | |
Sbjct 21498 GTGAAGTGATGGAGTTCACGTCGCCGGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAG 21439
Query 76059 CCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAA 76118
| || || |||| ||| |||||| || ||| |||| | || || | ||
Sbjct 21438 CGCTGCCCAAGTTTGT---TGAAGA---CGGCGTGTTTAATTACAAGAAGCTGTACGACG 21385
Query 76119 TCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG 76178
| || | | || || || || ||| || ||||| |||| || |||||||
Sbjct 21384 TGACCAGCGTCGTGACGCGTAACCTGAACAAGGTGATTGAGGTGAATTACTACCCCGTTG 21325
Query 76179 -AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTC 76237
||| || || | ||| || ||||| ||| | || | || | ||||| || ||||||
Sbjct 21324 CAGA-AGCTCGCACGTCCAACATGCGCCACCGTCCAGTCGGCATTGGTGTCCAGGGTCTC 21266
Query 76238 GCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAAT 76297
||||||| |||||| | |||||| ||||| || |||| |||| |||||
Sbjct 21265 GCGGATGCGTTTATTCTCATGAACTACGCGTTTGAAAGCGAGCAAGCGCGGGAGCTGAAT 21206
Query 76298 GCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG-AGTTGTGAATTGGCTGA 76356
||||| || || || || |||| || || || || | || |||| | |
Sbjct 21205 AAGAACATCTTCGAGACGATCTACTACGCTTCGATGAAGACGTCGATGGAGATTGCC--A 21148
Query 76357 AGCCCAAGGTTCC-TATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT-CAG 76414
|| || ||| || ||||| || |||| ||||| ||| ||||||| ||| |||
Sbjct 21147 AGGAATTGGGTCCGTACGAGACGTTCCAGGGCTCTCCAGCG-AGCAAGGGGATCTTCCAG 21089
Query 76415 TTTGATATGTGGGAAGGTGAAACCAAGCTCA----ACTACGACTGGGATGTTCTCAAG-- 76468
|| || ||||||| || | || ||| | |||||| | | |||
Sbjct 21088 TTCGACATGTGGG-GCGTCACGCCGTCGTCAGGTCTTTGGGACTGGACGGAGTTGAAGGA 21030
Query 76469 GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 76527
||||| |||| || | || |||| ||| ||| | |||| |||||||| || ||
Sbjct 21029 GAACGTGATCA---AGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGC 20973
Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587
|| || || || || |||| || || || | |||| || ||||| | || || ||
Sbjct 20972 TTCGACGGCCCAGATTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTA 20913
Query 76588 CCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT 76647
| | | || || || |||||| ||||| |||||| |||| | || || |
Sbjct 20912 CAACCGCCGCGTGCTGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATT 20853
Query 76648 CAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTC 76707
| | | || ||||| | || | | | || |||| | ||||| ||
Sbjct 20852 GATTGACCTGGGCATCTGGACGCCCGAAGTCCGCAACCAAATTCTGAACGACGGTGGCTC 20793
Query 76708 CATTCAAAATATCTCAGA-TATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGG 76766
| | ||||| | | ||| ||||| ||||| ||||| | ||| ||||||||||
Sbjct 20792 CGTGCAAAAGGT-TAAGACCATCCCGAATGATGTCAAGGAAAAGTACAAGACAGTGTGGG 20734
Query 76767 AAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAA 76825
|||| ||| ||| || | || | | || |||||||| ||| | |||| ||
Sbjct 20733 AAATTAAGCAGAAGTCGATCTTGGATCTCTCGGCTGATCGTGG-CGCGTACATTTGCCAG 20675
Query 76826 AGTCAAAGTATGAATCTATTCAT-----GGAAAGTCCAACGATGTCCAAGCTCTCTTCTA 76880
|| || | || ||||||| ||| ||| ||||| ||||| | || |
Sbjct 20674 AGCCAGTCGCTCAA--TATTCATATTGCGGA---TCCGACGATCAGTAAGCTGACGTCGA 20620
Query 76881 TGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926
|||| | ||||||||||| |||||||||| || || ||||| ||
Sbjct 20619 TGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGTATGTATTA 20574
>seq1591
Length=10447
Score = 93.3 bits (102), Expect = 5e-14
Identities = 244/370 (66%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || || || ||| | || ||||| || || || ||||| |||| || || |||
Sbjct 993 CCTGGGACAGGTAAAACCTTGCTGGCCCGTGCGATTGCCGGTGAGGCAAAAGTGCCTTTC 1052
Query 175375 ATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
|| ||| | | | | ||||||| ||||||||||| ||||||||||| | | ||
Sbjct 1053 TTC-AGTATTTCAGGTTCTGACTTTGTCGAGATGTTTGTCGGTGTGGGTGCGGCACGCGT 1111
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
|| || | ||||||| ||| ||||| || ||||| | || || ||||||||
Sbjct 1112 GCGTGACATGTTTGAAACAGCCAAGAAAAATGCGCCTTGTATCATTTTTATCGATGAGAT 1171
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553
||| || || || || || | || ||| | | || |||||| | |||||
Sbjct 1172 TGACGCTGTAGGTCGTCATCGTGGTGCAGGTACTGGTGGTGGTAACGACGAGCGTGAACA 1231
Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613
|||| | || || | | ||||||||||| ||||| | | | ||| | | ||
Sbjct 1232 AACATTGAACCAGATGTTGGTGGAGATGGATGGTTTTGAGGCTAACTCCGGCGTGATTGT 1291
Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTT 175673
|| || || || || || | ||| | || ||| | ||| | | || || || |||||
Sbjct 1292 GATCGCTGCAACCAACCGTGCTGATGTGCTGGATAAAGCCTTGTTGCGTCCTGGCCGTTT 1351
Query 175674 TGATCGCAAG 175683
||| ||| ||
Sbjct 1352 TGACCGCCAG 1361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596500375555040
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