Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq4110 91.5 2e-13 seq3583 82.4 9e-11 >seq4110 Length=2169 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2099 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2040 Query 18067 GTCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 2039 CTCCGATATTCTCCA 2025 >seq3583 Length=2760 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 ||||| ||||||||||||| |||||| ||||||||||| ||||| |||| |||||||| Sbjct 1963 CGGGGGGTTAGCTCAGTTGGCTAGAGCACCTGCTTTGCACGCAGGGGGTCATCGGTTCGA 2022 Query 18067 GTCCGCTATTCTCCA 18081 |||| ||| ||||| Sbjct 2023 CTCCGATATCCTCCA 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561182874185200