Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq4110 91.5 2e-13
seq3583 82.4 9e-11
>seq4110
Length=2169
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066
||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||||
Sbjct 2099 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2040
Query 18067 GTCCGCTATTCTCCA 18081
|||| |||||||||
Sbjct 2039 CTCCGATATTCTCCA 2025
>seq3583
Length=2760
Score = 82.4 bits (90), Expect = 9e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 18008 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066
||||| ||||||||||||| |||||| ||||||||||| ||||| |||| ||||||||
Sbjct 1963 CGGGGGGTTAGCTCAGTTGGCTAGAGCACCTGCTTTGCACGCAGGGGGTCATCGGTTCGA 2022
Query 18067 GTCCGCTATTCTCCA 18081
|||| ||| |||||
Sbjct 2023 CTCCGATATCCTCCA 2037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561182874185200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |