Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq2003 385 3e-102 seq3915 329 2e-85 >seq2003 Length=7520 Score = 385 bits (426), Expect = 3e-102 Identities = 693/1003 (69%), Gaps = 16/1003 (2%) Strand=Plus/Plus Query 9047 CGTGATATGGATTTCGCTTATGCTGGTGCCAAACAA-TTGATGGGCAAATACCTAGTACA 9105 || || ||| ||||| ||||||| | | ||| || |||| |||||||||||| || || Sbjct 6479 CGCGACATGAATTTCTCTTATGCGGCGGTCAAGCAGCTTGA-GGGCAAATACCTGGTGCA 6537 Query 9106 AAACCGCAAAACTAAAGAGCTGTTCGAAACCCCACAATTCTTGTATATGTGTGTTGCTAT 9165 |||||| || ||| | | | ||| | ||| || || | || || || || || Sbjct 6538 AAACCGTGTCACCAAAAAAATCTACGAGAGCCCGCAGTTTCTCTACATCCTGGTGGCGAT 6597 Query 9166 G-GC---TTTACACGCAAAAGAGCCAAAGAACAAGCGA--CTACAATACATCAAAGAATT 9219 | || ||| || || | ||||| || ||| || | |||||||| || Sbjct 6598 GAGCCTGTTT----GCCAACTA--CAAAGGCCAGGCGCGCCTCGAGTACATCAAGCGCTT 6651 Query 9220 CTATGATGCAGCGAGCACATTTGAAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCG 9279 || ||||| | | || || | ||||| || || || || |||||| | ||||| || Sbjct 6652 TTACGATGCGGTGTCTACCTTCAAGATCTCGCTGCCTACGCCTATCATGGCCGGTGTGCG 6711 Query 9280 TACACCGACCCGCCAATTCAGCTCATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATC 9339 ||| || || ||||| |||||||| |||||| ||||| | | ||| ||||| | Sbjct 6712 TACTCCTACGCGCCAGTTCAGCTCCTGCGTACTGATCGAGTGTGATGACAGCCTGGACAG 6771 Query 9340 AATCAATGCAACATCAGGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCAT 9399 ||||||||||| | |||| ||||||| || || || || || || || || ||| | Sbjct 6772 CATCAATGCAACCACCAGCGCGATCGTGAAGTATGTCTCGCAACGCGCCGGCATAGGCGT 6831 Query 9400 TAACGCGGGTCGTATCCGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATAC 9459 |||||||| || ||||| || | || ||||| ||||| || |||||| |||||| Sbjct 6832 CAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAGATACGTGGCGGCGAAGCGCAACATAC 6891 Query 9460 TGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGG 9519 ||||| | || |||||||||| ||||| | || ||||||| || || ||||| Sbjct 6892 CGGTTGCCTGCCGTTCTACAAACTGTTCCAGTCTGCGGTGAAATCCTGCTCGCAGGGCGG 6951 Query 9520 TGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTGGCACCTAGAGTACAAATCACT 9579 ||| || || || ||||| ||| | |||||||| |||||||||| || | ||||||| Sbjct 6952 TGTGCGGGGTGGGGCGGCGACGTTGTTCTACCCGTTGTGGCACCTTGAAGTCGAATCACT 7011 Query 9580 AATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTACGG 9639 | || || || |||||||| || | |||||||||||||| |||||| | || || || Sbjct 7012 GCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAAAACCGTGTGCGTCATCTCGATTATGG 7071 Query 9640 TGTACAAATTAATGGCCTGATGTATAAGCGTCTGCTGTCTGGTCAGAACATCACTTTATT 9699 || || || || |||||||||| |||| ||| | || |||||||||||| | || Sbjct 7072 CGTGCAGATCAACCGCCTGATGTACCAGCGCCTGATCAAGGGCCAGAACATCACTCTGTT 7131 Query 9700 CTCACCTCATAGTGTACCGGGTCTATACGATGCATACTTCGAAGACCAAGATAAGTTCGA 9759 ||||| ||| | | || || | |||||||| | ||| | ||||| || |||| || Sbjct 7132 TTCACCGCATGATATCCCTGGCTTGTACGATGCCTTCTTTGCCGACCAGGACGAGTTTGA 7191 Query 9760 GCGACTGTACACCAAAGCGGAATCTGAT-CCATCAATCGAAAAAGACACAATCTCTGCTA 9818 ||| ||||||||| | ||| | || | || || ||| | || || | || Sbjct 7192 GCGCCTGTACACCGAGTACGAAGCAAATGAAAGCATACGCAAACG-CAGCATTCCAGCGG 7250 Query 9819 AGGAAGCATTCAGCATACTAATGCAAGAGCGTGCTTCTACAGGTCGCATCTACATTCAGC 9878 || ||| | | ||||| |||||||| ||| || || |||||||| ||| Sbjct 7251 TAGACTTGTTCTCGCTGGTCATGCAGGAGCGTGCCGGTACCGGCCGTATCTACATCCAGA 7310 Query 9879 ACGTAGATCACTGTAACATTAACGGTCCTTTCGATGAGCGCGTTGCACCAGTACGCCAAT 9938 |||| || ||||| |||| || | || || ||| ||| || || || || || | Sbjct 7311 ACGTTGACCACTGCAACACGCACAGCCCGTTTGATCCTGCCGTGGCGCCGGTGCGTCAGT 7370 Query 9939 CAAACCTATGTATGGAAATCGCACTACCAACCAAACCGTTGAATAACGTCGATGATCCTG 9998 | ||||| |||||||||||||| || |||||||| || |||||| || || | || | | Sbjct 7371 CCAACCTGTGTATGGAAATCGCGCTGCCAACCAAGCCATTGAATGACATCAACGACACCG 7430 Query 9999 ATGGTGAAGTTGCGCTATGTACTCTATCTGCATTCAACTTGGG 10041 | || ||| | ||||| ||||| | || || || ||| |||| Sbjct 7431 AAGGCGAAATCGCGCTGTGTACCTTGTCGGCCTTTAACCTGGG 7473 >seq3915 Length=2367 Score = 329 bits (364), Expect = 2e-85 Identities = 710/1058 (67%), Gaps = 44/1058 (4%) Strand=Plus/Minus Query 10935 aaacaaaaaaCGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCC 10994 |||| | ||||||||||| || || || |||||||||||||| | || || || | | Sbjct 1067 AAACCGACAACGACCAACTCAAAGAACCCATGTTCTTCGGCCAGCCCGTCAATGTGGCGC 1008 Query 10995 GTTACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCT 11054 | || |||||||||||| || || || ||||| || | |||| ||||| || |||| Sbjct 1007 GGTATGACCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACTCTCCTTCT 948 Query 11055 TCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTACAGTAAAA---TGA 11111 |||||||||| |||||||| |||||||| |||||||| ||||| | || || Sbjct 947 TCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTA---TCAAGGCCTGC 891 Query 11112 CTGATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGA 11171 | || || || || || ||||| || ||||||||||| || || | || || || | Sbjct 890 CCGAGCATGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGGATTCCA 831 Query 11172 TCCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAA 11231 |||| ||||||||||| || |||| || |||| | |||||| | || || | |||| Sbjct 830 TCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGGTGTCATTGCCCGAGCTGGAAA 771 Query 11232 CTTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCA 11291 | ||| | || || ||| || ||| ||||| ||||| || |||||||| ||||||| Sbjct 770 CCTGGATCGAGACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCATACACCCACATCA 711 Query 11292 TTCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACA 11351 | |||||||| |||||||||||| | | |||| ||||| | || ||| | ||| Sbjct 710 TCCGCAATATCGTCAATGACCCTTCTGTCATGTTTGATGACATCGTGCGCAATGAAAACA 651 Query 11352 TCCTAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCATCTTGGCATGCAAAG 11411 || | ||| || | |||||| || | ||| ||||| || || ||| ||| | | | Sbjct 650 TCACCGCGCGTGCGACAGATATCGCCCATTATTACGATGAGCTGATC-CAGCAGACCATG 592 Query 11412 -AGCATGAGCTA------AACGGCAAACA---CA-CAAT-GCGCGACCTAA--------- 11450 | || || | | ||||| || || |||| ||| |||| || Sbjct 591 TTGTATTCGCAACTGGGTGAGGGCAATCATGTCATCAATGGCGAGACCAAAGTGGTCAAC 532 Query 11451 ----------AGAAAAAGTTG---TACTTGTGCATGATGGCTGTTAATGTATTAGAAGCA 11497 ||||||| || ||| ||| ||||| || ||| | | ||||| Sbjct 531 AAGCGTGCGCTGAAAAAGCTGCTCTACCGCTGCCTGATGAACGTCAATATCCTCGAAGCC 472 Query 11498 GTTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAA 11557 | || || ||||| || || || || || || || || || || ||| || | |||||| Sbjct 471 ATCCGCTTTTACGTCAGCTTTGCCTGCTCGTTCGCGTTTGCCGAGCGCAAGGTGATGGAA 412 Query 11558 GGTAATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACA 11617 || ||||| || |||||| || ||||| ||||| ||||| || |||| | ||| || Sbjct 411 GGCAATGCCAAGATCATCCGCCTCATTGCGCGTGACGAAGCCCTGCACCTCACCGGCACC 352 Query 11618 CAGCACATGCTGAAGATGTGGAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCA 11677 |||||||||||||| || | | |||| || ||| || | || ||||| Sbjct 351 CAGCACATGCTGAATATCATGCGCTCCGGCCAGGACGATGCCGAGTTCGCCGAGATCGCC 292 Query 11678 CATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGAC 11737 |||| | | |||| | || || ||||| | |||| || || |||||| | Sbjct 291 GCTGAGCTGCACACTGAGTGCTTTGAGATGTTCAAAAGCGCCGCCGAGCAGGAGAAAAAA 232 Query 11738 TGGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGT 11797 |||||| | || || || |||||||| ||||| || | ||||| ||||| || || Sbjct 231 TGGGCAGAATACCTGTTTAAAGATGGCTCCATGATAGGCTTGAACAAGGATATCCTGTGC 172 Query 11798 GAATATGTTGAGTACATCACAAGCCACCGAATGAAGTATGTCGGGCTACCTCCGCTACAC 11857 | || || || |||||||| | | ||| ||| | ||||| | || ||| | | Sbjct 171 CAGTACGTGGAATACATCACCAACACCCGTATGGCCTCGGTCGGCTTGCCACCGGCATTC 112 Query 11858 CCGGAAGC---AACTAACCCAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTT 11914 || | || || ||||| || ||||||||||||| |||| ||| |||| || Sbjct 111 CCCAATGCCAAAAACAACCCGATTCCATGGATCAACACCTGGCTGGCCTCCGATACCGTA 52 Query 11915 CAAGTTGCTCCACAGGAAGCCGAGATTAGTTCATACCT 11952 ||||| || || || || | ||| | || || ||||| Sbjct 51 CAAGTGGCGCCGCAAGAGGTCGAACTCAGCTCTTACCT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342933997236377