Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021298.1
Length=51252
Score E
Sequences producing significant alignments: (Bits) Value
seq5998 136 1e-27
>seq5998
Length=1361
Score = 136 bits (150), Expect = 1e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40562
||||||||||| | ||||||||||||||||| || ||||||||||| ||||| || |
Sbjct 711 AAGTCGATGTCAAAGTCGGGCATGGACACGCGTTCCGGGTTCAGGAAGCGCTCAAACAGC 770
Query 40563 AGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40622
| || || || || || || ||||| || || | | |||||| |||| || ||
Sbjct 771 AAGTTGTACTTGAGTGGATCAAGATCGGTAATGCCCAAGCTGTAGGCAACCAATGAGCCA 830
Query 40623 GCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAG 40682
|| |||| || ||||| || || ||| ||||| || | ||| |||||| ||| |||
Sbjct 831 GCACCAGATCCGCGCCCCGGCCCTACCGGCACGCCATTGTTCTTGGCCCAGTTGATAAAG 890
Query 40683 TCCGCGACGACGAGGAAGTACGACGGG-AAGCCCATCTGGATGATCATGTCG 40733
|| || |||| || ||||| | |||| ||||||||||| || || ||| ||
Sbjct 891 TCTGCCACGATCAGAAAGTA-GCCGGGAAAGCCCATCTGAATAATGATGCCG 941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163866734056644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |