Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq5998 136 1e-27 >seq5998 Length=1361 Score = 136 bits (150), Expect = 1e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40562 ||||||||||| | ||||||||||||||||| || ||||||||||| ||||| || | Sbjct 711 AAGTCGATGTCAAAGTCGGGCATGGACACGCGTTCCGGGTTCAGGAAGCGCTCAAACAGC 770 Query 40563 AGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40622 | || || || || || || ||||| || || | | |||||| |||| || || Sbjct 771 AAGTTGTACTTGAGTGGATCAAGATCGGTAATGCCCAAGCTGTAGGCAACCAATGAGCCA 830 Query 40623 GCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAG 40682 || |||| || ||||| || || ||| ||||| || | ||| |||||| ||| ||| Sbjct 831 GCACCAGATCCGCGCCCCGGCCCTACCGGCACGCCATTGTTCTTGGCCCAGTTGATAAAG 890 Query 40683 TCCGCGACGACGAGGAAGTACGACGGG-AAGCCCATCTGGATGATCATGTCG 40733 || || |||| || ||||| | |||| ||||||||||| || || ||| || Sbjct 891 TCTGCCACGATCAGAAAGTA-GCCGGGAAAGCCCATCTGAATAATGATGCCG 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163866734056644