Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq5850 95.1 6e-15 >seq5850 Length=1395 Score = 95.1 bits (104), Expect = 6e-15 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 62049 GATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTG--TGTC-GA 62105 |||| ||||| | || | ||||||||||||||||| ||||||||| |||| |||| || Sbjct 749 GATGAAGCAGATCGGCACGCTCGGCGGCGGCAACCATTTCATCGAGGTGTGTCTGTCGGA 808 Query 62106 CGCCGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGAT 62165 |||| ||| | || |||||| | ||||||||||| || ||| ||||||| | | Sbjct 809 CGCC---GACGAGGTCTGGCTGATGCTGCACTCCGGGTCACGCAACATCGGCAAGGAACT 865 Query 62166 CGCGCAGCGCCACATCAAGGCGGC 62189 ||| |||| |||||| || ||| Sbjct 866 GGCGGAGCGGCACATCGCGGTGGC 889 Score = 89.7 bits (98), Expect = 3e-13 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 62471 TCGACGGGGAGCGAGTGTGGTTGACCCGCAAGGGGGCAATCGACGCGACCGAGGGCAAGC 62530 ||||||| |||| || | | || || |||||||| ||| ||| | ||| | | Sbjct 1129 TCGACGGCGAGCCGATGCTGGTCACGCGTAAGGGGGCGATCCGGGCGGGCCGGGGTGATC 1188 Query 62531 TGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGGGGAAGGGCTGCA 62590 | || | ||||| || |||||||| ||| | || |||||||||||||| ||||| | Sbjct 1189 TCGGGCTCATCCCCGGGTCGATGGGTACCGGTTCCTACGTGGTGCGGGGCCTGGGCT-CC 1247 Query 62591 GCGCT-TCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTCTCCCGCACGAAGGCC 62649 | | | || || | || ||| | || || || || || | | |||||||||||| Sbjct 1248 GAGTTGTCCTTCAACTCGGCGTCGCACGGGGCGGGACGGACGATGAGCCGCACGAAGGCG 1307 Query 62650 AAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAGATGCAGGGCATCGAGTGGCGCGAG 62709 ||| | | ||||||| || |||||||| ||||| | ||| |||| | |||| || Sbjct 1308 AAGAAGCGGTTCACCGTCGACGACCTGGCGCGGCAGACGTCCGGCGTCGAATCGCGCAAG 1367 Query 62710 GAC 62712 ||| Sbjct 1368 GAC 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258901905414108