Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021299.1
Length=80955
Score E
Sequences producing significant alignments: (Bits) Value
seq5850 95.1 6e-15
>seq5850
Length=1395
Score = 95.1 bits (104), Expect = 6e-15
Identities = 109/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 62049 GATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTG--TGTC-GA 62105
|||| ||||| | || | ||||||||||||||||| ||||||||| |||| |||| ||
Sbjct 749 GATGAAGCAGATCGGCACGCTCGGCGGCGGCAACCATTTCATCGAGGTGTGTCTGTCGGA 808
Query 62106 CGCCGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGAT 62165
|||| ||| | || |||||| | ||||||||||| || ||| ||||||| | |
Sbjct 809 CGCC---GACGAGGTCTGGCTGATGCTGCACTCCGGGTCACGCAACATCGGCAAGGAACT 865
Query 62166 CGCGCAGCGCCACATCAAGGCGGC 62189
||| |||| |||||| || |||
Sbjct 866 GGCGGAGCGGCACATCGCGGTGGC 889
Score = 89.7 bits (98), Expect = 3e-13
Identities = 167/243 (69%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 62471 TCGACGGGGAGCGAGTGTGGTTGACCCGCAAGGGGGCAATCGACGCGACCGAGGGCAAGC 62530
||||||| |||| || | | || || |||||||| ||| ||| | ||| | |
Sbjct 1129 TCGACGGCGAGCCGATGCTGGTCACGCGTAAGGGGGCGATCCGGGCGGGCCGGGGTGATC 1188
Query 62531 TGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGGGGAAGGGCTGCA 62590
| || | ||||| || |||||||| ||| | || |||||||||||||| ||||| |
Sbjct 1189 TCGGGCTCATCCCCGGGTCGATGGGTACCGGTTCCTACGTGGTGCGGGGCCTGGGCT-CC 1247
Query 62591 GCGCT-TCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTCTCCCGCACGAAGGCC 62649
| | | || || | || ||| | || || || || || | | ||||||||||||
Sbjct 1248 GAGTTGTCCTTCAACTCGGCGTCGCACGGGGCGGGACGGACGATGAGCCGCACGAAGGCG 1307
Query 62650 AAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAGATGCAGGGCATCGAGTGGCGCGAG 62709
||| | | ||||||| || |||||||| ||||| | ||| |||| | |||| ||
Sbjct 1308 AAGAAGCGGTTCACCGTCGACGACCTGGCGCGGCAGACGTCCGGCGTCGAATCGCGCAAG 1367
Query 62710 GAC 62712
|||
Sbjct 1368 GAC 1370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 258901905414108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |