Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4319 114 4e-20 seq1430 114 4e-20 seq113 89.7 2e-12 seq311 84.2 6e-11 >seq4319 Length=2037 Score = 114 bits (126), Expect = 4e-20 Identities = 222/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||| || ||||||||||| || || |||| ||| |||| || || | | || | Sbjct 1199 ACCAACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTC 1140 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA-- 289146 ||| || || | || || || || || | ||| ||| ||||||| |||||||||||| Sbjct 1139 AAACAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAATTCAGAACC 1080 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | ||| || || ||| | ||| || || || || ||||| | || | | || Sbjct 1079 ACTGATGCT--AAAGAAAGGCACAGAAGCCTCACCAGCAACTGCTTTAGCAATCAAGGTT 1022 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 |||||||| ||||| || || | | | || || || || | || || ||| | | Sbjct 1021 TTACCTGTACCAGGCGGGCCTACAAGCAAGACGCCTTTAGGAATCTTGGCGCCAAGGGCC 962 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| ||||| |||| || || |||||||| || ||||| | ||| || ||| Sbjct 961 TGATATTTATCAGGAGATTTTAGGAAGTCGACAATTTCTTCGAGTTCCTGTTTAGCTTCA 902 Query 289327 TCACATCCTGCTACATCAGCAAAAGT 289352 ||| || || ||||| |||| || Sbjct 901 TCAGCACCAGCAACATCGTCAAAGGT 876 >seq1430 Length=11834 Score = 114 bits (126), Expect = 4e-20 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| |||| ||||| ||| ||||| || || | || ||||| || || | || Sbjct 3988 GGCAATAATCCCACAAATATCGCACACGTGCACACGATAGGCATCCGAGTTTGCAAAGAG 3929 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 |||| || || ||| | | |||||||| |||| ||| || ||||||||||| || Sbjct 3928 CCGATCCATGAGGAAATTGGCCGAGCCGTGTGAGATCAAACAGTCGCGCTCCATTTCTCC 3869 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | || |||||||| |||||||| | |||||| |||||||| || || || || Sbjct 3868 CATGCGTAGACCACCCTCGCGAGCACGACCCTCCATTGGCTGACGCGTCAGCATAGTCAC 3809 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||||| || ||| || | ||||||||||| | ||||||||||| Sbjct 3808 CGGACCACGCGAGCGCGAGTGAATCTTGTCGTCAACCATATGCTTCAATCGCTGGTAGAA 3749 Query 251643 TGCGGGACCGATGAAGAT 251660 | |||||||||||||| Sbjct 3748 GGTTGGACCGATGAAGAT 3731 >seq113 Length=57615 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 |||||| || | || ||||||||||||||||| ||||| ||| | || || || || || Sbjct 49410 CTTAATAGCCGAAGCCAGAGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 49351 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 || | | || |||||| | || |||||| || || || || || ||||| |||||||| Sbjct 49350 GAGCACCAAAATGTGCGGGTTCAGCCACATCGCAGCGGCGAGCACGACCTTCACCTTCTG 49291 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 49290 ACCACCCGACAG 49279 >seq311 Length=43657 Score = 84.2 bits (92), Expect = 6e-11 Identities = 175/256 (68%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| || || || | || || || || |||||||| | ||| | ||| Sbjct 22074 CGTCGCTGAATGTAGCCGGTCTCGGCGGTCTTCACGGCAGTATCAATCAAACCTTCGCGA 22015 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 |||||||| || ||||| || | ||| | ||| || | ||| ||| | |||| ||| Sbjct 22014 CCACCCATGGCGTGGAAAAAGAACTCCTGTGGT-GTCAAACCCTTCAAGTA-GGAGTTCT 21957 Query 302711 CAACGAAACCACGCGCCTCGGGCG---AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | ||||| ||||| ||| || |||| || || | |||| ||||| || | Sbjct 21956 CCACGAAGCCACGACTCTCAGGTCCTAAATCATCT---TTCCCATAGTGCGGCAGCGTGC 21900 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | | | ||||| || || |||||||| || || || ||||| |||| ||| | || Sbjct 21899 GATGATTGAAACCGTACGGAATGCGCTTTCCCTCGACATTTTGCTGACCCACGCAGGCAA 21840 Query 302828 TCATCTGCGAAATATT 302843 | ||||||||||| || Sbjct 21839 TAATCTGCGAAATGTT 21824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471642544314371