Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4319 114 4e-20
seq1430 114 4e-20
seq113 89.7 2e-12
seq311 84.2 6e-11
>seq4319
Length=2037
Score = 114 bits (126), Expect = 4e-20
Identities = 222/326 (68%), Gaps = 4/326 (1%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
|||||| || ||||||||||| || || |||| ||| |||| || || | | || |
Sbjct 1199 ACCAACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTC 1140
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA-- 289146
||| || || | || || || || || | ||| ||| ||||||| ||||||||||||
Sbjct 1139 AAACAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAATTCAGAACC 1080
Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206
| ||| || || ||| | ||| || || || || ||||| | || | | ||
Sbjct 1079 ACTGATGCT--AAAGAAAGGCACAGAAGCCTCACCAGCAACTGCTTTAGCAATCAAGGTT 1022
Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266
|||||||| ||||| || || | | | || || || || | || || ||| | |
Sbjct 1021 TTACCTGTACCAGGCGGGCCTACAAGCAAGACGCCTTTAGGAATCTTGGCGCCAAGGGCC 962
Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| |||||| ||||| |||| || || |||||||| || ||||| | ||| || |||
Sbjct 961 TGATATTTATCAGGAGATTTTAGGAAGTCGACAATTTCTTCGAGTTCCTGTTTAGCTTCA 902
Query 289327 TCACATCCTGCTACATCAGCAAAAGT 289352
||| || || ||||| |||| ||
Sbjct 901 TCAGCACCAGCAACATCGTCAAAGGT 876
>seq1430
Length=11834
Score = 114 bits (126), Expect = 4e-20
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
||| |||| ||||| ||| ||||| || || | || ||||| || || | ||
Sbjct 3988 GGCAATAATCCCACAAATATCGCACACGTGCACACGATAGGCATCCGAGTTTGCAAAGAG 3929
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|||| || || ||| | | |||||||| |||| ||| || ||||||||||| ||
Sbjct 3928 CCGATCCATGAGGAAATTGGCCGAGCCGTGTGAGATCAAACAGTCGCGCTCCATTTCTCC 3869
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
| || |||||||| |||||||| | |||||| |||||||| || || || ||
Sbjct 3868 CATGCGTAGACCACCCTCGCGAGCACGACCCTCCATTGGCTGACGCGTCAGCATAGTCAC 3809
Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642
||||| ||||| || ||| || | ||||||||||| | |||||||||||
Sbjct 3808 CGGACCACGCGAGCGCGAGTGAATCTTGTCGTCAACCATATGCTTCAATCGCTGGTAGAA 3749
Query 251643 TGCGGGACCGATGAAGAT 251660
| ||||||||||||||
Sbjct 3748 GGTTGGACCGATGAAGAT 3731
>seq113
Length=57615
Score = 89.7 bits (98), Expect = 2e-12
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062
|||||| || | || ||||||||||||||||| ||||| ||| | || || || || ||
Sbjct 49410 CTTAATAGCCGAAGCCAGAGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 49351
Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122
|| | | || |||||| | || |||||| || || || || || ||||| ||||||||
Sbjct 49350 GAGCACCAAAATGTGCGGGTTCAGCCACATCGCAGCGGCGAGCACGACCTTCACCTTCTG 49291
Query 354123 TCCGCCTGATAG 354134
|| || || ||
Sbjct 49290 ACCACCCGACAG 49279
>seq311
Length=43657
Score = 84.2 bits (92), Expect = 6e-11
Identities = 175/256 (68%), Gaps = 10/256 (4%)
Strand=Plus/Minus
Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652
|| |||||||| || || || | || || || || |||||||| | ||| | |||
Sbjct 22074 CGTCGCTGAATGTAGCCGGTCTCGGCGGTCTTCACGGCAGTATCAATCAAACCTTCGCGA 22015
Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710
|||||||| || ||||| || | ||| | ||| || | ||| ||| | |||| |||
Sbjct 22014 CCACCCATGGCGTGGAAAAAGAACTCCTGTGGT-GTCAAACCCTTCAAGTA-GGAGTTCT 21957
Query 302711 CAACGAAACCACGCGCCTCGGGCG---AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767
| ||||| ||||| ||| || |||| || || | |||| ||||| || |
Sbjct 21956 CCACGAAGCCACGACTCTCAGGTCCTAAATCATCT---TTCCCATAGTGCGGCAGCGTGC 21900
Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827
| | | ||||| || || |||||||| || || || ||||| |||| ||| | ||
Sbjct 21899 GATGATTGAAACCGTACGGAATGCGCTTTCCCTCGACATTTTGCTGACCCACGCAGGCAA 21840
Query 302828 TCATCTGCGAAATATT 302843
| ||||||||||| ||
Sbjct 21839 TAATCTGCGAAATGTT 21824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471642544314371
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |