Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq5998 136 1e-27 >seq5998 Length=1361 Score = 136 bits (150), Expect = 1e-27 Identities = 263/380 (69%), Gaps = 16/380 (4%) Strand=Plus/Plus Query 40110 AAGGGCTTGTCGAGCACGCGAGCCGCGTCCT---TCATCGCGTT-GCGCGCCTTGATCCG 40165 || ||| ||| |||||||| || | ||| ||| ||| || ||| ||| || ||| Sbjct 570 AAAGGCAGGTCAAGCACGCGGCCCACATCCCGAATCACCGCCTTTGCG-GCCATGGTCC- 627 Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225 || | || |||||||||| |||| | | || || || || ||||||| | || Sbjct 628 --CGAAGGTGGCGATCTGCGAGACCGAGGCCAGGCCATATTTGCGCTTGACGTAATCAAT 685 Query 40226 GACCTCGCCACGACGCCGGTCATCG---AAGTCGATGTCGACATCGGGCATGGACACGCG 40282 ||| || | || | || | | ||||||||||| | ||||||||||||||||| Sbjct 686 GAC---GCGATCGCGGCCCTCTTGGCAAAAGTCGATGTCAAAGTCGGGCATGGACACGCG 742 Query 40283 CTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40342 || ||||||||||||||||| || | | || || || || || || ||||| || Sbjct 743 TTCCGGGTTCAGGAAGCGCTCAAACAGCAAGTTGTACTTGAGTGGATCAAGATCGGTAAT 802 Query 40343 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC 40402 || | | |||||| |||| || || || |||| || ||||| || || ||| || Sbjct 803 GCCCAAGCTGTAGGCAACCAATGAGCCAGCACCAGATCCGCGCCCCGGCCCTACCGGCAC 862 Query 40403 CCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGG-AACC 40461 || || | ||| |||||| ||| ||||| || |||| || ||||| | |||| || | Sbjct 863 GCCATTGTTCTTGGCCCAGTTGATAAAGTCTGCCACGATCAGAAAGTA-GCCGGGAAAGC 921 Query 40462 CCATCTGGATGATCATGTCG 40481 ||||||| || || ||| || Sbjct 922 CCATCTGAATAATGATGCCG 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163306795788594