Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq2003 226 3e-54 seq3915 104 3e-17 >seq2003 Length=7520 Score = 226 bits (250), Expect = 3e-54 Identities = 325/458 (71%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 41642 AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCC 41701 ||| | ||| | ||||||||||| ||||| |||||||||||||||||||| ||||| | Sbjct 6674 AAGATCTCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGC 6733 Query 41702 AGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCG 41761 |||||| |||| || | | ||| |||| | ||||| ||| ||| Sbjct 6734 TCCTGCGTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCG 6793 Query 41762 ATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCG 41821 |||||||||||| | || ||||| || || || || || ||||| || | || |||||| Sbjct 6794 ATCGTGAAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCG 6853 Query 41822 ATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAA 41881 |||| | || ||||| || ||||| ||||| || | ||||||| ||| Sbjct 6854 CTGGGCAGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAA 6913 Query 41882 CATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACG 41941 | | ||| | ||||| |||||||| || || || ||||| || ||||| || || ||| Sbjct 6914 CTGTTCCAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACG 6973 Query 41942 TTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAA 42001 |||| || ||| | ||||| | ||||| ||| |||||||| |||||||||||| Sbjct 6974 TTGTTCTACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGC 7033 Query 42002 GGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATG 42061 || || ||| | |||||| | ||||| || ||||||||||| ||| | ||| ||||| Sbjct 7034 GGCGTAGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATG 7093 Query 42062 TATAAACGTTTGATGAATAACGATTACATCACTCTGTT 42099 || | || |||| || | | ||||||||||||| Sbjct 7094 TACCAGCGCCTGATCAAGGGCCAGAACATCACTCTGTT 7131 >seq3915 Length=2367 Score = 104 bits (114), Expect = 3e-17 Identities = 185/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 43394 GTTGCCCGATATGAAGAACAAAAACACAGTGTATTTGAAAAGCTGACTGAAAAACAACTG 43453 || || || ||||| |||| ||| | || || || ||||||| || |||||||| Sbjct 1014 GTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACTC 955 Query 43454 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTATGCGAAA 43513 || ||||||||||| || |||||||| ||| ||||| ||||| | ||| Sbjct 954 TCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGGC 895 Query 43514 ATGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTACTGGAT 43573 |||| || |||||||| |||||| |||||| | ||||| || || |||||| Sbjct 894 CTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGGAT 835 Query 43574 ACCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGAT--TGCCTCTGATGTATCAA 43631 |||| ||||| || |||||||| | || || | ||| | || | || | | Sbjct 834 TCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGGTGTCATTGCCCGAGC-- 777 Query 43632 TGGAAACGTGGATCGAAACATGGGCGTT 43659 ||||||| |||||||| || |||||||| Sbjct 776 TGGAAACCTGGATCGAGACCTGGGCGTT 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563732978243160